RNA id: XM_039799359.1


Basic Information

Item Value
RNA id XM_039799359.1
length 2379
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120558386
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20820171 ~ 20952518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCATGTCCGAATAACATAGCGTCCGGTAACTTCCTGATGGATTCTTTAATGGGAGGATCATCTTCCTTCAGGGGTGAGGGTTATTCCAGCAACCCCGGGATGTACATCCACACAGCTGCAGAGTACGGATATTCGGTGATGAGAAACATTGGTAAGATTGGACCATCTGCCCTCTCCAAAAGAGACGAGGTTCCTCCGGGCAGTCTGCCGCTCAGCGGCTTCCAGGATGCGCCCTACCTGTCAACACAGCTGGCCACATGGACCCCAGGCTCCAAAACCAGTAGGGACGAACAACCTGTTGCCCAGTGTTTACAACCGTGCTCGTTTCCAGGGGGCAACGTCAAAGAGGAGGCGTTTTGTTGCCTCTACCAGGATGACAGCAATAAGGGGAAACAGACAACAGAGTCGGCCACTTACATCCGGCTCGGTGACAATAGCTGCAGGTCTGAGCAAACCGCCTCGTCCAGCGGCTGTTTCCAGGTGTACAACGGAGAGAGGCCCCAGCAGGACGACCAGCAGTTCCCCTCCGGCTTCTCTCTGACCCACTTGGCGACATCTGTTGAATCAGCATCAGAGTCGACAATAAGTTGCAGCAAATCGGCGCAGGACACAGCGAGAGAGGTTTCAAAGACAGATGAGAGTCAGAGCAGGAAGGAAGAGAAGGCCAAGAGTGACAGCTGTTCAGATAACTCGGACGGGGAATTAAAAGATGATTTATTCGCGGAAAAGACAACGGGAAGCTGGTTAAAAGCCAAAAGTGGAAGGAAGAAGCGGTGTCCCTACACAAAGCACCAGACGCTGGAGCTGGAGAAGGAGTTCTTGTTCAACATGTATCTGTCTCGGGAGCGCCGCCTGGAGATCAGTCGAAGTATCAACCTGACCGACAGACAGGTCAAGATCTGGTTCCAAAACAGACGCATGAAGCTCAAGAAGCTCAACAGGGAGAGCCAAGAAAGGGAGCACAGTGCAGTTTATAACTATTCCTGAAGAGATTTCTACCTACACAtgcattcacaaacacacacacatacacacccatacacatacacatacacacacaccctacagCTCTGCATAGACAttacagatacagacagacatgcatgtGTCATCTTATAATGCATTCAATAATCATTCATCAAATTTCTCTTAATGTGCACACcagacactcacatacacatggCGTGCCTTCCTTCCTATATGAACTATGAAACGCTGCGACCCGCAGACTAGACAATAGAGTTCCAGGTGAACCCTTGCAGCAGCATTGGGACAGTGAGGTGCTTTTACCTTGCAATGATAATTATAATATAACATGAAGCAAACGAGGAAGCAATCTCAAGCAGTCTATAAATAACTCGTGGCATGTAAGCAGTTTCACTTTGCTGTGCTACAGCCTAATGTATGTTTTGCCACTTGTGCTGCTTCTTCGTTGGTGTCTGTTGCTGTGGCATATTCTTCGTGCAGTGTAATGTGCATGCACCAGACGATATTAAGCTATGTCATGGCAAACGATTCCAAAACAATAAAAGGAGGGGGAAATGGAAAGGTATTACCAACTTTGTCCTTCCCCTGGCATAGTGGTACAaatgagagggagggagagacactGCGGATGAGAGAAGAGGTTCATGGCAGTTTTAATAGAAGTGAGAGACCATAACGTTGATTTAAATATTATCCAGGTGACCACAGTAAGTCAAGGTCATAAAATTCTAATGTCAGGTTCGCCCTGGAAAGCGTTGGGGGTGGATTTTATGATCTGCAAATATAATGTGCTGCAGCAGTAAAGATGCGTTTAAaggtgtgtgtggaggagggctAATCCACACAGCAAAGACTGCAATGTGCAGGATCCAGCCGAGTCGCTGGGCTGGAAGGAGCAGCCGCCTCCACCCGGGATAATGGAGCAGGAGATAAGAAAGATGGTGGATAAAGGGACAGCAACCGCGACGGCTGCAGgaacaataataacaacaggCATCACGGCAAACACGTGGATAACTAAACGCACCGGGAAGACTTCTGCAGGAGGCAACAGAAGacagtTCATCGGGTCAAAATGAGTGGGACCGTGGATTTATCATTAAATAAAcgcaggctactcaaagaaatGTTGCCTGAAGAAATATCGCAGAAGCTTCTTCGGGCGCCCCAAGTTGCCAGAGGATTACTTTGCAACTCCAGAGCTCCGCCATTGGAGGACGGCCGCACGTGACTACGGCACCCTTCTGTTGCAGGTTGAACCCAGGTGAACAGTGTCAGAGCCCACTGGAGCCTCTGGTTCACTGCCATGCCAAGGGCAAGCTGGACACCAAGAGCAGGAGCTGCAGTCTACTCTCCATCTGCGGCTCAGGAGTGATCTTTCCCTGGATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17444 HOXC10; homrobox protein Hox-C10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68915 lncRNA downstream 94270 20725627 ~ 20725901 (-) True G51577
TU68912 lncRNA downstream 97173 20722650 ~ 20722998 (-) True G51574
TU68904 lncRNA downstream 156594 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA downstream 156595 20662428 ~ 20663576 (-) False LOC120558476
TU68877 lncRNA downstream 378364 20441496 ~ 20441807 (-) True G51544
TU68930 lncRNA upstream 7693 20882974 ~ 20952782 (-) False G51589
TU68929 lncRNA upstream 45414 20920695 ~ 20952782 (-) False G51589
TU68967 lncRNA upstream 149852 21025133 ~ 21031699 (-) True G51614
TU68973 lncRNA upstream 161801 21037082 ~ 21041944 (-) True G51620
TU68958 lncRNA upstream 170768 21046049 ~ 21048786 (-) True G51606
XM_039801897.1 mRNA downstream 11637 20800099 ~ 20808534 (-) True hoxc1a
XM_039800290.1 mRNA downstream 65641 20751583 ~ 20754530 (-) True hnrnpa1b
XM_039800315.1 mRNA downstream 79212 20730106 ~ 20740959 (-) True copz1
XM_039800269.1 mRNA downstream 388440 20409537 ~ 20431731 (-) True LOC120558914
XM_039800238.1 mRNA downstream 491832 20325451 ~ 20328339 (-) True fkbpl
XM_039799364.1 mRNA upstream 6747 20882028 ~ 20886252 (-) True hoxc11a
XM_039799367.1 mRNA upstream 19987 20895268 ~ 20899135 (-) True hoxc12a
XM_039799365.1 mRNA upstream 30775 20906056 ~ 20910417 (-) True hoxc13a
XM_039799485.1 mRNA upstream 88465 20963746 ~ 21006268 (-) True rarga
XM_039799486.1 mRNA upstream 88465 20963746 ~ 20983430 (-) False rarga
unassigned_transcript_227 other downstream 499333 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 1113371 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 1118720 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 1120277 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1933418 18880365 ~ 18886753 (-) False LOC120558627
XR_005639105.1 other upstream 8657 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 8657 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 8657 20883938 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other upstream 8657 20883938 ~ 20952009 (-) False LOC120558386
XR_005639109.1 other upstream 45418 20920699 ~ 20952518 (-) False LOC120558386

Expression Profile