Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_005639104.1 |
| length | 652 |
| RNA type | transcript |
| GC content | 0.48 |
| exon number | 5 |
| gene id | LOC120558386 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 20820171 ~ 20952518 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU68915 | lncRNA | downstream | 158037 | 20725627 ~ 20725901 (-) | True | G51577 |
| TU68912 | lncRNA | downstream | 160940 | 20722650 ~ 20722998 (-) | True | G51574 |
| TU68904 | lncRNA | downstream | 220361 | 20662353 ~ 20663577 (-) | True | LOC120558476 |
| XR_005639129.1 | lncRNA | downstream | 220362 | 20662428 ~ 20663576 (-) | False | LOC120558476 |
| TU68877 | lncRNA | downstream | 442131 | 20441496 ~ 20441807 (-) | True | G51544 |
| TU68967 | lncRNA | upstream | 72615 | 21025133 ~ 21031699 (-) | True | G51614 |
| TU68973 | lncRNA | upstream | 84564 | 21037082 ~ 21041944 (-) | True | G51620 |
| TU68958 | lncRNA | upstream | 93531 | 21046049 ~ 21048786 (-) | True | G51606 |
| TU69031 | lncRNA | upstream | 214204 | 21166722 ~ 21167748 (-) | True | G51673 |
| TU69042 | lncRNA | upstream | 246822 | 21199340 ~ 21199849 (-) | False | esyt1a |
| XM_039799363.1 | mRNA | downstream | 8657 | 20851072 ~ 20875281 (-) | False | LOC120558386 |
| XM_039799362.1 | mRNA | downstream | 8657 | 20862507 ~ 20875281 (-) | False | LOC120558386 |
| XM_039799370.1 | mRNA | downstream | 19615 | 20861762 ~ 20864323 (-) | True | hoxc9a |
| XM_039799371.1 | mRNA | downstream | 25702 | 20854604 ~ 20858236 (-) | True | hoxc8a |
| XM_039799372.1 | mRNA | downstream | 38174 | 20843693 ~ 20845764 (-) | True | hoxc6a |
| XM_039799485.1 | mRNA | upstream | 11228 | 20963746 ~ 21006268 (-) | True | rarga |
| XM_039799486.1 | mRNA | upstream | 11228 | 20963746 ~ 20983430 (-) | False | rarga |
| XM_039799487.1 | mRNA | upstream | 11228 | 20963746 ~ 20982399 (-) | False | rarga |
| XM_039800109.1 | mRNA | upstream | 96326 | 21048844 ~ 21066026 (-) | False | rbms2b |
| XM_039800110.1 | mRNA | upstream | 96519 | 21049037 ~ 21064482 (-) | True | rbms2b |
| unassigned_transcript_227 | other | downstream | 563100 | 20320767 ~ 20320838 (-) | True | trnae-uuc_54 |
| XR_005639385.1 | other | downstream | 1177138 | 19706679 ~ 19706800 (-) | True | LOC120559930 |
| XR_005639383.1 | other | downstream | 1182487 | 19701330 ~ 19701451 (-) | True | LOC120559928 |
| XR_005639384.1 | other | downstream | 1184044 | 19699773 ~ 19699894 (-) | True | LOC120559929 |
| TU68271 | other | downstream | 1997185 | 18880365 ~ 18886753 (-) | False | LOC120558627 |
| XR_005639338.1 | other | upstream | 215453 | 21167971 ~ 21199043 (-) | True | fmnl3 |
| XR_005639356.1 | other | upstream | 1021183 | 21973701 ~ 22015043 (-) | False | si:dkey-151g10.3 |
| XR_005639375.1 | other | upstream | 1270631 | 22223149 ~ 22229421 (-) | False | LOC120559880 |
| TU69738 | other | upstream | 1577088 | 22529606 ~ 22530708 (-) | True | G52226 |
| XR_005639228.1 | other | upstream | 2261580 | 23214098 ~ 23218900 (-) | False | si:ch211-150o23.3 |
