RNA id: XM_039799370.1


Basic Information

Item Value
RNA id XM_039799370.1
length 1509
RNA type mRNA
GC content 0.44
exon number 2
gene id hoxc9a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20861762 ~ 20864323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCGCTGAGAAATAATTACCTGCCTTGATTGTTCTATGGCTAGATAAAAAAGTACACATACACTCCATATAATAATCGGATGCATGTAAAAGAGTCGGGGAAGCTTCGACATGTCGACCACGGGTCCCATAAGTAATTATTATGTGGACTCCTTGATCAACCATGAAAACGAGGATGTCCTTGCTGCAGCTCGGTTTTCGGCTCCCGGTTCGCACCCAGCCGGCCCTCGCCCAACGTCTCTAGTACCGGAGTGTGCTGACTTTCCTTCCTGCAGCTTCGCACCCAAGGCACCCGTCTTCTCCACCTCCTGGACCCCTGTACACTCCCAGTCATCAGTGGTTTACCATCCATACAGTCATCAACCTCATTTAGGCACAGACTCGAGGTATATGCGGTCATGGTTGGAGCCGATATCAGGCGCCGTGCCTTTCCATGGCTATCCGGGGAACAGCAGGCACTATGGGCTGAAGCCCGACGCCTTTCAGGAGCACAGAGCCGCCGAGTGTCTCGGCTCCAGCGGACGGACCTACACGGATTATCTGTACTGCTCGTCCACTGACATGCGAGAGAAGACGCAGCAAAATATCCCCTCTCCCGAGTCGGAAATCCTGACTTCAGGGAAACATAAAGACGAGAAGCCGGAGCTAGATCCGAATAACCCTGTGGCAAATTGGATACACGCCCGCTCCACGAGGAAGAAGCGATGTCCATACACAAAGTACCAGACTCTCGAACTGGAGAAGGAGTTTTTGTTCAATATGTACCTTACTAGAGACCGCCGATTCGAGGTCGCGAGGGTCCTGAATCTGACCGAGAGACAGGTCAAAATCTGGTTTCAGAACCGGCGAATGAAGATGAAGAAAATGAACAAAGAAAAGACCGACAGCAAAGAACAATAATGTGTGGACTGCAGTCACAAAACAACCATAGTAACCACTAGTCACATGGACAGCACAGATGTACCAAAACACACGATGATCCctatctctcctcctcttcgtaTTTATCACTATGTTGGATTTTCTATTAACCTTAACTTCGAGACAGTTTGATTCTGATTATGTTATTTTCCAGTGCACACGTGTGTGtccacctatatatatataaaaaaaagaaaaatatacttCTAAGGGAGATAATTACGTTCTGCCTTCACTTCGAAATACCTTTACGTTTTTTTGTAAGAGAAATTATACATGTGCAGTTTTGGACATGTTAAAACTGTCTGAAGAAAGAGAATACTTGAATTCTTTTGAATTTCACAAACCCATAATTTATGATGTGAATGTTTTCTTTCATGTTTCTTCCTTTGTACGTTGTTGTGCAGGTGCAGTATTTTGTACAGAAATGGAACATCTGCCATCGGACTTGTCTGTCTTGTATTTTTGTGATAGTTGTTGCTGTATTTGTGCATCTTTTTTGATTGTAGCCTACGAGTTTAACGATAGAGTGTAGATACAGACTTCTGCAAATATAAACATTATCACTAAGTGCTTGTATGCTGTGTT

Function

GO:

id name namespace
GO:2001213 negative regulation of vasculogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09294 HOX_9; homeobox protein HoxB/C/D9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68915 lncRNA downstream 135861 20725627 ~ 20725901 (-) True G51577
TU68912 lncRNA downstream 138764 20722650 ~ 20722998 (-) True G51574
TU68904 lncRNA downstream 198185 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA downstream 198186 20662428 ~ 20663576 (-) False LOC120558476
TU68877 lncRNA downstream 419955 20441496 ~ 20441807 (-) True G51544
TU68930 lncRNA upstream 18651 20882974 ~ 20952782 (-) False G51589
TU68929 lncRNA upstream 56372 20920695 ~ 20952782 (-) False G51589
TU68967 lncRNA upstream 160810 21025133 ~ 21031699 (-) True G51614
TU68973 lncRNA upstream 172759 21037082 ~ 21041944 (-) True G51620
TU68958 lncRNA upstream 181726 21046049 ~ 21048786 (-) True G51606
XM_039799371.1 mRNA downstream 3526 20854604 ~ 20858236 (-) True hoxc8a
XM_039799374.1 mRNA downstream 15998 20843693 ~ 20845764 (-) False hoxc6a
XM_039799373.1 mRNA downstream 15998 20843693 ~ 20845764 (-) False hoxc6a
XM_039799372.1 mRNA downstream 15998 20843693 ~ 20845764 (-) True hoxc6a
XM_039799375.1 mRNA downstream 18869 20839951 ~ 20842893 (-) True hoxc5a
XM_039799364.1 mRNA upstream 17705 20882028 ~ 20886252 (-) True hoxc11a
XM_039799367.1 mRNA upstream 30945 20895268 ~ 20899135 (-) True hoxc12a
XM_039799365.1 mRNA upstream 41733 20906056 ~ 20910417 (-) True hoxc13a
XM_039799485.1 mRNA upstream 99423 20963746 ~ 21006268 (-) True rarga
XM_039799486.1 mRNA upstream 99423 20963746 ~ 20983430 (-) False rarga
unassigned_transcript_227 other downstream 540924 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 1154962 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 1160311 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 1161868 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1975009 18880365 ~ 18886753 (-) False LOC120558627
XR_005639106.1 other upstream 8385 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 19615 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 19615 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 19615 20883938 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other upstream 19615 20883938 ~ 20952009 (-) False LOC120558386

Expression Profile