RNA id: XM_039799371.1


Basic Information

Item Value
RNA id XM_039799371.1
length 2287
RNA type mRNA
GC content 0.43
exon number 2
gene id hoxc8a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20854604 ~ 20858236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAACCTTTGCTAAGGCACACCCAAAGCACATGCCATGAGCCGGGTTTGAGCCTGCGAAACCTGGGGAAAAACACTCACGACTGCGAGAGGAACGGCTCACACAGAGTGAGCTGTCGTAGATTGTCCAAAGGGGCAGCGTTTCTCCTAGTTCCGGTTTGTCTGCCTGTGCGCGCTGTGCGAGTTGGGACCCTAAACAAAAGGCTGCCATCATCCTAAAGGAGATATTCTGCGAGAGAGCCCGTCTGCTTGATGCTAACTAAACATGAGCTCCTATTTTGTTAATCCTCTTTTTTCTAAGTACAAAGGCGGCGAGTCACTGGAGCCAACTTACTACGACTGCAGGTTTCCACAAAGCGTTGCCCGCAGCCACACGCTGGTTTACGGACCCGGAGCAGCCGCACCGGGCTTTCAGCACCCGTCCCATCATGTGCAGGACTTTTTCCACCACGGGACCACTGGGATCTCCAACCCCGGATACCAGCAAAACCCCTGCGCTTTGGCTTGCCACGGAGACGCAACGAAATTTTATGGATATGAAGCCCTTCCGAGGCAAACGCTTTATGGTACCCAGCAAGACGCAAGCCTAGCGCAATACCCAGACTGTAAATCGTCGAGCAGCTCTAACCCCGGAGAAGGACAAGGCCACTTAAATCAAAACTCCAGTCCCAGTCTTATGTTTCCTTGGATGAGACCCCACGCCCCAGGCAGACGGAATGGGAGGCAAACCTACAGTCGTTACCAAACTCTTGAACTGGAGAAGGAGTTTCTCTTCAACCCTTACCTGACCCGCAAGAGAAGGATTGAGGTGTCTCACGCCCTGAGCCTCACCGAGCGGCAGGTGAAGATTTGGTTTCAGAACAGGAGGATGAagtggaaaaaagaaaacaacaaagacaAGTTTCCGGGTCAGAGAGGAGAGGCTGAAGCCGAGGCCGAGGAAGAGGGCAACGAGGACGGTGAAGGGGAAGAGGCAGAAGAGAAAGAAgcggaagagaaagaagagaccAAGGAGTGATTTTATGGTCCTTTTTATGGTTATATggctgaaaaagagaaaagagaggtcCCATAAACAGACGAAGAGTCACAAGGAGGCAGAGAGCGTCAACTTTATGACCACCCTTTCATTATGTCAAGAGGGAACAGGAATCCCTCTTAATATTGCTGTCATAAGTAGACAAAATTCTCCCTTCTCACGATTATCCTAACATGAGTTGCATTTGGATTTGGATTCTGTAGAAGCTACACACGCTTGTAGCTCATTTTCTTTGATAGAACAGTCACCCTTGCCAAAAGAGGGTCAATTAAAACGCATGTTAGATGGAAAATGGCttagctatttttttttatacccatTTTGCTTTTAATAATTGTATCAGAAGCATAGCCAAATAAGATCAAAACATGACCAACGCCGACCTGtgttgtaaatatattatagcctacatttaaaaGAACATGGACGTCATTTCAGAGTAGCCTTTCCGAAATTGTAAGCGAAATGTATGGCCTATAACTTAGTAGTAAGTGTTCAAACATCATCGCAGCAGTTACATTGGCTAACGACCTGTGTAGAAACCACAAGTTTTATTATTCTAattgttactgttactgttttACTCGTTTTCATGTGAATGGCCTAGACAAAGATAGCCATTAGCTCCTCAGACATCTTTTTCTAGGATTACCAGGGAAATGCAATCGTTTGAAATCCTTTGATGCTACCTAAACCTGGGGGAATTGCAATAGAGATTTCTGAATATAGAGATTTCATatggttttaattttaaaagtgTTCTATATCATCATTATATTAAGTTATGTATGTAGCATTTAGCCTACccaatatacaatatacactTGTTGAAGACAATTTGTGAGTCTTGGGAAGACAATTAGTTTAAAGCCAAGCAAACTATTTTGAGATTGTACCACGGCACTACCTAAACTCAGAGCTTTGCCTTTGCTGAATTTATATTCCTCACTTGTGGCATCGCTCTGATTCGATTGCAAGCTATTTCCCCAACAACTAAAACTGCCTATAACGCACATTTACTGTTTATGATAATACATGCTACAATTACAAGGATTTTAAAATAAgggaatttttattttaatgtgctGGTGACATAGCGTAGTTGTTTTTGCACTGAATATAATCTTTATGTACGTCTTGTTATATATTGATGTTAACAATATGCTCGTTTCCTGGTGTTTCTCCTGTGAAAGACGGAATTGTGTGTCCCCGCCATTGTtgatgtaaaattacaaataaacaaaatggc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68915 lncRNA downstream 128703 20725627 ~ 20725901 (-) True G51577
TU68912 lncRNA downstream 131606 20722650 ~ 20722998 (-) True G51574
TU68904 lncRNA downstream 191027 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA downstream 191028 20662428 ~ 20663576 (-) False LOC120558476
TU68877 lncRNA downstream 412797 20441496 ~ 20441807 (-) True G51544
TU68928 lncRNA upstream 3990 20862226 ~ 20952782 (-) True G51589
TU68930 lncRNA upstream 24738 20882974 ~ 20952782 (-) False G51589
TU68929 lncRNA upstream 62459 20920695 ~ 20952782 (-) False G51589
TU68967 lncRNA upstream 166897 21025133 ~ 21031699 (-) True G51614
TU68973 lncRNA upstream 178846 21037082 ~ 21041944 (-) True G51620
XM_039799374.1 mRNA downstream 8840 20843693 ~ 20845764 (-) False hoxc6a
XM_039799373.1 mRNA downstream 8840 20843693 ~ 20845764 (-) False hoxc6a
XM_039799372.1 mRNA downstream 8840 20843693 ~ 20845764 (-) True hoxc6a
XM_039799375.1 mRNA downstream 11711 20839951 ~ 20842893 (-) True hoxc5a
XM_039799368.1 mRNA downstream 20607 20828727 ~ 20833997 (-) True hoxc4a
XM_039799370.1 mRNA upstream 3526 20861762 ~ 20864323 (-) True hoxc9a
XM_039799362.1 mRNA upstream 4271 20862507 ~ 20875281 (-) False LOC120558386
XM_039799364.1 mRNA upstream 23792 20882028 ~ 20886252 (-) True hoxc11a
XM_039799367.1 mRNA upstream 37032 20895268 ~ 20899135 (-) True hoxc12a
XM_039799365.1 mRNA upstream 47820 20906056 ~ 20910417 (-) True hoxc13a
unassigned_transcript_227 other downstream 533766 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 1147804 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 1153153 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 1154710 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1967851 18880365 ~ 18886753 (-) False LOC120558627
XR_005639106.1 other upstream 14472 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 25702 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 25702 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 25702 20883938 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other upstream 25702 20883938 ~ 20952009 (-) False LOC120558386

Expression Profile