RNA id: XM_039799382.1


Basic Information

Item Value
RNA id XM_039799382.1
length 5140
RNA type mRNA
GC content 0.58
exon number 10
gene id asxl1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3983273 ~ 4005648 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacagttctctGTAGCAGTGTCAGCTGCTACTGTTAAAATGGTAAAGACTGTAATGATACAAGCTTGTCTAGTATGTTTTACCAGTCAGTGAACTAATCGCACAGCGCACACATAACCTGAACATGTCAATTAGTGTGGTTATAACGATGTTTTTAATTTCCTTCCACATGGACCACTTTGCCTGCTGCTGGCCTAAACAGGAGTGGTACAGCCCCATTGGCCTGCCTGGTCACCATGCTGCACTCCCAGGTGAGGGGAGACCGAGTCAAGAACAGCATCTTCTTCAAGCTGCCTGGGCGGATGAGCCTGTTCACTCTCAAGAAGAACGCCCTCCAGTGGACAAAGGCAACATCAGAGTCTGAGACATCAACAGAGCTGGCCAGCAACACGGGCCCCCCAgcctccagcagcagcacccCTTCAGCAGGAACGGCTGTGGCCCCAGTTGGCCCCTCTGAGGCCACGGAGCAGGAAAGCTGTGACTCAACTGAAACCACCGCCGCTGCCAGCGGAGACAATGATGcaTCGGTGGATGAGAGCTCGTCCAGTGCCTCATGCTCCACAGAAGTGCCGGCCCCCAGCAGCCAGCCCCAGACCCGCCTCAGCAGGGCAGCGGGACAACAAGGACGCATAGACGCACAGCAGAGCCAACATGCGCCACACGCCCAGACCAGACTGAGCCGCTCCAGACAGTCAGGGAGGCAGAGGAAGAAAGCAGTCATGATGCCTCGTGTTGTCCTCACCCCTCTTAAAGTGAATGGAGAGCATGTCCCCCAAGGGCCCATAAGGAGGAGTCGGGGAGGGGTGGATGTGGACTTTGAAACCCCAGGCTCCATCCTGGTCAACACCAACATCAGAGCCCTCATCAATGTGCGGACCTTCGCAGCCTTCCCCACACActcgcagcagcagctgctgcagcttcTGCCAGAGGTGGACCGACAGATCGGACCAGATGGTATGGCCAGACTGAGTAGCTCTGCTCTCAACAATGAGTTCTTCACCCATGCCTCCCAGAGCTGGAAAGAGAGGCTGGCGGAGGGTGAGTTCACCCACGAGATGCAAGTGCGTTTCCGGCAGGAaatggagaaagagaagaaggtaGAGGCGTGGAAGGAAAAGTTTTTTGAAGAATACCATGGGCAAAAGTCTGGCCTGACACAAGAGGAGTCCCTAAAGCTTACCATGTCTGAAGCCAGTGAAGTTGCAGCCAGTGTGCTTGACAGTGATGTGGCTGTGGTGGCAACTGGTGCCCCCAAGAGACGCGGTGTTGGCCGGCGGAGGAGAGACGGCAGGATGAGGAGACGCACGAGGGCTGACCTGCGTAGGAGGGCCCGCCGGACCCTCTGCAAGGCCACTCCTCCAGCCATGCAGCCTGCAGAAGCAGCGGAGGCCAGAGCTGCACTGGACATCCCGGCAGTTTCTGTTGGCTCTCCCATGTCTGACAACACGGTCGTTCAAGATGAGGTGGTGCTGCAGTCTGAGTGTGGCGTGGAGCTCCCAGCTGAGAGTGCCGGCGTAGAGCCAAAGCCCACTCCAGAGCCAGTCACGTTGCCAGCCTCCACTCCCACACCTACGCCCACTCCTACGCCCACTCCTACCACGCCCACGCCCACTCCCACTCCCACTCCCACTCCCACTCCCAGTCCCAGTCCTAGCCCAGCCTCCACCAGCGCTAATGAAGAGCCTGAACCTGTGGCCCGCCTGCTCCCAGAGGAGGCTGCACCTGTACTGGCTTCCACctcctcaccttcctcttcctcctcctcttcttcttcttcctctgcctcctcaCCTGTCTCCTCACCCTCCTCACCTTCTGATAGGCAAGGAGCGTTTGCCGCAGGCCTGGACTCTTCTTCGTCCTCCTCAGCGTCCTCCAGTGCCGCAGTCGCTGCCGATCCCTTGGATGACACTGCGTCCGTGGTCACCTCCATCACAGGGGGTACTGCCACCAGCAGCCGTGAGAGTAGCCCCTCAGCCAGCCCAACCACCACCCCCGTATCCAGTGCTCAGCCCAAGGAGCAGAAGAGAAGGCCCGATGAGGCTCAGGCCTTCTCCAGTTTCCCCGAAAAGAGGCCGCGGCTTGACGACCGTCAGTCCTTTCGTACCACAATTGACAGTGTCCGTTCGGAGAAGCCGCAGCCGACAACCGAGGAGCCCAAGGTGCCGCCTATCAGGATTCAACTGTCCAGAATCAAACCCCCCTGGGTCAAAGGCCACCCCACCTACCAGATCTGCCCCCGCATCGTGCCCCCCGGCGAGGGCTCGCGGCGGTCGGGGACGGGGGGCGCGCGCACCCTGGCGGACATCAAAGCCCGTGCCCAGCAAGCCCGGGCCCAACGCGAGGCCGCTGCTGCTGTTGCAGCCACTGGCGAGGGGGCAGGGCCGGACGGGGTCAGGCTGCGGCCTGCTGCTGGGCTACCGGATAGCAGCAATGGACGACGAGCGCGAGAGCACCCAGGACCCATCGAgcccggaggaggaggaggaggaggaggaggaagaaggagaggtggagggatggaggagcAGGGAGCGTCTTCAGGCACTAATTCGTCTGGAACACAACTACAGCTTCTCAATGTAGAAGCCACGCCCCAACCATCTCCTTCTCTGTCCACCACCTCAACCTCCATGTCCTTTGAACCCCCACAGACCCCAAGCCCTCCTCGAGAAGAGGCAGCTGGGGAGCCAGAGGCTGAAGAAGAAGTAGAAGCAACATCAGCCAGTGTCCAGAGCTCCTCGAATGGGCTCACAGACAGGGCAGCCGACTTGCCCTCTCCAAAGCCTGAGGTGCCCGAGTCTGCTGCTGCCCCCGCAGAGATGGCTGACAAGGTTTGTGAAAAGCCCTCACTAGCTCCAACCTCCATCCCAGATTCGGTTCCAAGGTTCGGGGCTCAGGGTGTGGATGTTATTCAGACGCTGGCCAGCTCCCGTCAGCCCAAAGAGCAGGTACAAGTGAAGGAGGCTGGACTAGGTGGCGTAATCCAGCATGGCTCCCACCACGTGGAACCCCATGAGGTCTTATCTGTCTCAGCGGCAGAGAGACGGAAAACGGACGCATCCTCTCTCCAACAGGTGGACTCCTCTGGTGAAGAGAAAGACGACGAGGCTGGGACACATAGCGACTCCACGGAAACGGCTTCAGACTGTGAGAATGACATCCAGGaggatgagcagcagcagcctgacCACGGCTGGTGTCCCCAACTGAGCATCCAGAGAAACGGCCAGCTGGTCATCTGCAGCCCCCCTGTTCAGAACCAGCAGCCAGTCATCCAGGCCCACGTGTCCAGCCGCCAGGGCCACACTGTCATTCAGCCTTGCTTCCCCAACGGCATGCTCCACCCTCAGCACCACCAGGACAGCAAGCCTCTCCCCATAGCCCATCCACAGGGGCTCAGGGACACCAACGTGGTGGTCAAAGTGGAGCCTGGGGATGATTGTAGAGTCTCCAGACAGAGCTCTCCTGAAGAAGAGTCTTGTGGAGGTTTAAAGCCTTCTGTCACTCCCCCCACTGCTGCAGCTGCCTCCAAGAGACTGGCCAGCTCGGCCAGACCAGTGTCCAGTGTGGAGGCCAACAACCCTTTGGTCACTCAGCTACTGCAGGGCAGCCTGCCCCTGGAGAAAGTTCTACCCCCCCACTCTGCCAACAGGCTGGAGATCAGCCGATTGCCAGGACCCCACCCCAGACCACCAGTGGCAAGGACCTCAGGGCTTCGCACCAGGCCTGAGGCCTCCGCCCAGTCTCCCAGCCCAGAACTGATCCACAACAAGTCTCCAACAGGTTGCCCGGTCTCATGTCTGATGGAGGCCCCAGCTGCATCGCAGTATCAGTGTCAGCAGGCTCCCGGGGCTGTCCCGGTCATCACTTCTCTGCcgccctcctcatcctcctccagaAGTAAGTCAGACCTTAGCCCCCAGACCACCGGGGAGTGTGCAGTTCCAAAAGACTCTCATGGTCCTCAGCCCTCGCAGGGGGTCACTCCAGACAGGCCCCAGCCAGCCCACCGGACCATGCCTAATGGTCCCTCTCCTCCCCACGCAGACCCCTGTCCCACAGAGGCCGTGCCTACGAGTAAGATCAACTGGCGGCCCCCACAGTCTCAGCTCCCCCCCTCTCACCAACTGCAGCTGTCGCCTGCACCCACTGTAAAGAATGAAGCAGGTGTGCGGGCCCCTTGCCAGGCTCTTGCCAAATCATCCCCCATTAAACCCATGAGTGTTACCAAAAAGGAGCCTGGGAGCTGTGTGGACGGCTACCTGAGCGGAGGGGCCATGGAGGGACTCCTCAACATGGAGATGACTTTTGCCAGGATGGCAAAGAAGGAGCACGGCAAAGCTAGCTACTCGGCTggctctccctccccctctgccTCGGCCCTTCCCTTCCAGCTGTACGGGAAGCTCCCCAAGCACGGCTCCGTTGGGGGAGTGAGCTACACAGCCAACGTGTCGGTGTTGGACAACGGCGGTTTCTCCCGGAGCATGGCGGACAGTGTGCTTCAGCTGCGCCCCCGCTTGGCCTCCAGCCAGACCACGCTCAGCATCCAGGCCTTTACTGACAGTACGGCCGAGGAGGTGGCGCTCAAGTGCTCGTGCCGCCTCAAAGCCATGATCATGTGCCAAGGCTGCGGTGCCTTCTGCCATGACGATTGCATTGGGCCCTCCAaactgtgtgtgtcctgtctggTGGTCAGATAGTATGTTCATCTGTGTACAGCAGGAGGACTGGGGGGGCTCCAGAGAGCATACAGGAGGAGCCCAGCGGGCAAGATTTGCCTTGTATAATATAATCAgtctgtatttttgttgttgcagattttcagattttttttttagctgtacttatatattattattattgttgttgttgttattgttattattattaatattattatgtgAATTTGGGGCATGGTTAATTGTAaattgtgcctttttttttggtttctttCCTCAAAAACATTTACCTCATCTTATCTTGCTCCACCTGTCATCATCATGTGGTGGCCATCATTGTTTTGGTCCCTTGTTTCCTCGGCGAACAAGGACCTATTGTTGTCTCTTTGCGCAAAGAagtatttttttaaccattaaAATGATTCAATGACATTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62981 lncRNA downstream 14144 3966776 ~ 3969129 (-) True G47083
TU62952 lncRNA downstream 47689 3934511 ~ 3935584 (-) False LOC120559679
TU62929 lncRNA downstream 52610 3930310 ~ 3930663 (-) True G47043
TU62928 lncRNA downstream 53834 3929139 ~ 3929439 (-) True G47042
TU62915 lncRNA downstream 57254 3879072 ~ 3926019 (-) True G47033
TU62993 lncRNA upstream 51377 4050510 ~ 4059713 (-) True G47092
TU62994 lncRNA upstream 53584 4052717 ~ 4055342 (-) True G47093
TU63032 lncRNA upstream 197655 4196788 ~ 4197049 (-) True G47122
TU63077 lncRNA upstream 392136 4391269 ~ 4391763 (-) True G47162
XR_005639158.1 lncRNA upstream 462654 4461787 ~ 4462206 (-) True LOC120558635
XM_039799344.1 mRNA downstream 28503 3952301 ~ 3954770 (-) True LOC120558369
XM_039801593.1 mRNA downstream 33102 3935308 ~ 3950171 (-) True LOC120559679
XM_039801137.1 mRNA downstream 55117 3913993 ~ 3928156 (-) False si:dkey-16n15.6
XM_039801136.1 mRNA downstream 55118 3913993 ~ 3928155 (-) True si:dkey-16n15.6
XM_039801135.1 mRNA downstream 73725 3880310 ~ 3909548 (-) True LOC120559452
XM_039800534.1 mRNA upstream 284055 4283188 ~ 4381061 (-) False LOC120559100
XM_039800533.1 mRNA upstream 284055 4283188 ~ 4381061 (-) True LOC120559100
XM_039800538.1 mRNA upstream 284055 4283188 ~ 4381020 (-) False LOC120559100
XM_039800536.1 mRNA upstream 284055 4283188 ~ 4380883 (-) False LOC120559100
XM_039800535.1 mRNA upstream 284055 4283188 ~ 4380882 (-) False LOC120559100
TU62956 other downstream 26891 3955604 ~ 3956382 (-) True G47059
TU62955 other downstream 27744 3955026 ~ 3955529 (-) True G47058
TU62665 other downstream 697350 3283041 ~ 3285923 (-) True G46817
unassigned_transcript_223 other downstream 1038349 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 1038946 2944256 ~ 2944327 (-) True trnaq-cug_2
TU63179 other upstream 731368 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 733663 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 2697312 6696445 ~ 6721729 (-) True G47624
TU63635 other upstream 2805008 6804141 ~ 6805706 (-) True G47638
TU63670 other upstream 2956071 6955204 ~ 7036375 (-) True LOC120558602

Expression Profile