RNA id: XM_039799385.1


Basic Information

Item Value
RNA id XM_039799385.1
length 1338
RNA type mRNA
GC content 0.46
exon number 6
gene id nkain5
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12271487 ~ 12280037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACCGCCTCCCCTCCCCCTGCTCCGTAGTTCCCACTCAGGGACAGCCTACGTGTTTTCCTCAGGAGCTGAAGTGCGCTGTGCGTTTCCTCACACATCTGGAGAATATGGACCTAACGCTTGTGTTTGAGCATTAAAAAACACAATCGAGTTACTTCACTGCACTTTTccccatcatcttcatcatcttaATCAGAGCCAGCGggagcaggaaggagaggaagatgGGCTGCTGCTCGGCACGATGCATGTTGATCCTCCTGTGTTCTCTGCAGTTGATCACTGCGCTGGAGAGGCAGGTATTTGACTTCCTCGGCTACCAATGGGCTCCCATCATGATCAACTTCTTCCACGTCATCGTGGTCATCCTGGGCCTGTTTGGTGTCATCCAGTACAGGTCACGCTACGTCATTATGTACCTGCTGTGGATGCTGTTGTGGGTCGGCTGGAATGTCTTTGTTAGCTGTCTCTACTTGGATTTGGGAGGCCTTTCAAAGGACAGTGATATCCTCTCCCTGGGAGTATCGTTGCACCGCTCGTGGTGGAAGGATAACGGGCTGAGATGTGGGAGCGAGGGCCTTGCCTCCGCTGGGTGGCAGAACCAGCAGAACCAGCAGAACCCCGAGCTGACCACAGTGCTGAGCTGCTGGCTAGAATACCAGTACATAGAAGTCCTGCACTGCATCGTCCAGCTGCTCATATCGCTCCCGGGATTTGTTTATGCCTGCTACGTCGTCAGCACTTTCTCAGATGAAGAAGACAGCTATTATAAATAACCACACAAATAAAGTGGTTCAGGAAAGCCGAGAAGGAACCTAGCAGAAGGGAAGACAACTTTGAAGACTGTCATTGTGACATTGCTTCAGCCTGGTTCTCAAAAACTCCTGTCACAGATGCTGAACCTCACTGTGCACAAACTGTACACACTGTCCTGAGTCAAGAGGAGAATTTCACTGTATAAAACGTGCAGACCTATtcatgacatgttttttttctcaggccTAAAATGCTGTAAATCCAGATTTTAAtctacctctgtgtgtgtgtgtgtcagtgtgtgtcagtgtgtgtgaatgagataGAAACCAATAGATATCAAGCACTCAAGTACAAAAGAAAAGTGTGATTTGaaagatgtaaataagtcaCAGATTCTTTCTGgtgttttgtaaaatgtataaattATTAATGTGTCATTTTAGTTAGAAAAAGTGACCATGCAAACTTGTGTAGTGACTGATATAACTTAGCGAAATAAACCACACTCACAAAACAGCTTGTATTGCGGTGTTGCAcacatttctttattattaaacatttataagacttttttttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65579 lncRNA downstream 26654 12243202 ~ 12244833 (-) True G49115
TU65582 lncRNA downstream 57946 12211743 ~ 12213541 (-) True G49118
TU65583 lncRNA downstream 57946 12211743 ~ 12213541 (-) False G49118
TU65570 lncRNA downstream 124454 12146728 ~ 12147033 (-) True G49112
TU65542 lncRNA downstream 130073 12140935 ~ 12141414 (-) True G49092
XR_005639120.1 lncRNA upstream 71390 12351427 ~ 12368708 (-) True LOC120558423
TU65653 lncRNA upstream 91784 12371821 ~ 12373308 (-) True G49178
TU65652 lncRNA upstream 95300 12375337 ~ 12375562 (-) True G49177
TU65654 lncRNA upstream 96251 12376288 ~ 12376976 (-) True G49179
TU65655 lncRNA upstream 96942 12376979 ~ 12380785 (-) True G49180
XM_039801415.1 mRNA downstream 956 12259997 ~ 12270531 (-) True ythdf1
XM_039801712.1 mRNA downstream 33750 12233105 ~ 12237737 (-) False dnajc5aa
XM_039801709.1 mRNA downstream 33750 12233105 ~ 12237737 (-) False dnajc5aa
XM_039801710.1 mRNA downstream 33766 12233105 ~ 12237721 (-) True dnajc5aa
XM_039801711.1 mRNA downstream 33771 12233105 ~ 12237716 (-) False dnajc5aa
XM_039799415.1 mRNA upstream 26221 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA upstream 26221 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA upstream 26221 12306258 ~ 12319826 (-) True uckl1a
XM_039799418.1 mRNA upstream 43448 12323485 ~ 12331992 (-) True samd10a
XM_039799419.1 mRNA upstream 108966 12389003 ~ 12391677 (-) False fkbp1aa
TU65587 other downstream 48485 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 102278 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 143062 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 143062 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 380441 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 108944 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 139749 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 972375 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1860343 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2252087 14532124 ~ 14534605 (-) True G49766

Expression Profile