RNA id: XM_039799397.1


Basic Information

Item Value
RNA id XM_039799397.1
length 2076
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120558412
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11865707 ~ 11871461 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCCTTTTTAAGTGAAGTGAGAACACCCCTTGTTAGAGCTAACTCCAGTGACAGATGAAGTGTACCGTCAATCATGTCCCAGAAGGTATTGCTGATTAAGCTGCTGTTGGTGCATTATGCAACCCAGGAAATGCAAACTGCAAACTGCGATGAAGATGTTGTTCTGAAGTGTGAGCGTCCAGGTGTTGATATTGACACTGTGGATTACCTCTCTGTGGCATGGTACAAGTTCAAcaaccagaagaaaaaaaatggtatcaTCAGGATGTCTAAAGATAACAATACCCCGCAGTACTACAGCTTCCCTCGTTCACCCCAACCCAGTTTTGGAGAGAAACACAGTTTGTTGCTGCCCAGGGTGACACCTGAAGACTCAGGCACCTACGAGTGTCACATCAGTGCAAATGTGGGGAGTCAAAATCAGGATCTTAGCGTCAACCTAATGGTTCACGCTTGTGCGACCCAGGCTGACCTGACAACAATGACAACTGTGTTGAACACGACTCAGTCCGCAGCAGTCTGCCACAGACAAGTGGAGGACATGCCAGTCATGTGGAGCATAATAGTTTATGTGGCAGTGGGCCTCAGCAAAATCGTTTTAGCTCTAATCAGCATTTGGGTTATTGAAGCTGTTCGTATGAGGTCTTCAAGACGATGGCAGCATTAGTGACGAAGCTGACCTGTGAGATCATGTAAATAGCGGACAAATCTTCAAAATCAGCTATTACACATGATTTTATTGTTGCATTTCTTATGTACTGTACTTCACTTGttttcagagatttttttttccagtaaagCATCCTCAGTTTCTAAAAATGTGTCACTCTGCTGAACCAAACCATGTGTGGCTTTTTTATTGGCACGATAGAGGTCAACTCACCAAGAATATCTAAACAGTAACAGACATGAGAGGATGTAAAGCTTATATAGAggaacaaaaccacacacacacacacacacacacacacacacacacaccatgcacaCACTTCTACAGGTGTAAACAGCATTTATTGTAGTATATGATAGCTGATATTGTGATAGGTATATCGTAACATTGAATGGATCTGTGTACAGGGATTTTAACAAACTTCTGATATGCTAACATagtttaaatgaaaaagctcAGCTAattgtctgtgtttttaattGTGCTGTTAGTTACTatgaaaaataacacatttactTTTCACGATAAAACTAGAGCAACTGTATCCCACAGCTTTTGGGATTCACCCACCACATGTTCTACTTTAGTTCCTGTCATGAATCAACTGCTCAAAGAAAATGATACCACTCCACAATGAGTAGAACCACAAACACCAATAAACATATCAACAAGCCGTTATCAGATGTATAATCAGATGTATATTGTGGTTATGTTATCTTTAAAAATCTCTTTCACTATTCAGTTTCAGACTTTGAGTTTGAAGGCTGAAGACCTCTTGCGGTGAGTGCTCCCCTGTTTAGGAAGTAAGTGTGAAAGTGCAGCATGTCGAGATGCTGTATTCATGCTCTCCAGTCTGTATCGACTCTCCCTGTTGGGGATGTAAAGAAATCCAGCAGCTTTTATCCTGCAGACACTAACACCCACCGATCGTCACAGTGAGGGAGCGGGTGAGCGTCTGCCTCTGAGTTCTCCTCCTGGTTTACAAAGTCAAACTAATACAGAAAAAGCATTAAATGGATCACTGCCTTTTGAAAATGTTGATTTGAGATCATTAAGGAGGCGAGGCGTCTCACGGAGAGCAGCTCAGCAGGCACAGAGTGAGGGAAAATGTGCACAGATCCCCACCTACTGGCACATCCTCAgacaacaccaccaccacattCAGACAAAATCAAACATCAACTGAAGTTAGAGTTCAAGAGTTGAACTGTTTTTAAACAGGCTTTACATCATTTAAATTTGTGAGATTTGGTATTTGGTATGATGCACCATGGAGTGAGCCAGTAAGTATAAACTCACTACTGggtttaaaagaagaaaaagaaactgtTGTAAATTTGATTCATTAAATTTGTGATTTAATGATGATGCGGTCTGTCTCTAgatctttacatagcaaata

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04664 Fc epsilon RI signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65307 lncRNA downstream 249998 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 259093 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 265199 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 286719 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 292718 11564071 ~ 11572989 (-) True G48903
TU65449 lncRNA upstream 14504 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 87918 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 131806 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 248197 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 248291 12119752 ~ 12121550 (-) False G49084
XM_039801624.1 mRNA downstream 2013 11855050 ~ 11863694 (-) True slc13a3
XM_039801842.1 mRNA downstream 17620 11844711 ~ 11848087 (-) True LOC120559814
XM_039799420.1 mRNA downstream 24134 11835663 ~ 11841573 (-) True LOC120558426
XM_039800928.1 mRNA downstream 40490 11818150 ~ 11825217 (-) True LOC120559301
XM_039800949.1 mRNA downstream 59263 11784803 ~ 11806444 (-) True spats2
XM_039801194.1 mRNA upstream 6891 11878352 ~ 11880620 (-) True tcf15
XM_039801936.1 mRNA upstream 17356 11888817 ~ 11891139 (-) False srxn1
XM_039801638.1 mRNA upstream 27357 11898818 ~ 11907613 (-) True scrt2
XM_039800835.1 mRNA upstream 68799 11940260 ~ 11945510 (-) True slc52a3
XM_039800849.1 mRNA upstream 81714 11953175 ~ 11957391 (-) False LOC120559253
TU65038 other downstream 1210889 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1839882 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2141573 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2167600 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3759512 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 17480 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 255425 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 255425 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 278333 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 349276 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile