RNA id: XM_039799418.1


Basic Information

Item Value
RNA id XM_039799418.1
length 1296
RNA type mRNA
GC content 0.53
exon number 5
gene id samd10a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12323485 ~ 12331992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGGGCCCCGGGGCTGCACTTTGAGCTCACTGCGCTCATGCAGGCTCTTGAGAAAAAGCCGCGCGTCTGATTCTCACGACAAAGATataaaaccacacacaaacacatactgcACACGCGCGCTTCTCGCGCACGCCATATAGCCAGCGGAGCCAGCGCGAGCCAGCTGCTCGGGGACATTCTTGTCGTGTCTTCGACAACTTCAGTCCGCAGACACCAGCAGCGACTGGCACCGGTGGACGACGTGAGCCGGTTTGAAGGCATTTTTCCCCCAGTCAAACCAGTTGAGACTTGAGAGGATGTGGAGCGTCATTCCTCCTGCCAGACCTCACTGAAACTTTGTCGGTAAACACAACGCGGAGAGGCGGGCGCGCAGGACCCGCAGCCTGTGTGTCGGTCACCGGAGACGATGGGAGACTCTCACTAGATCCACTACGGCACGGAAACACCATGGCTGTGGACGCGGCATCCAGTTTCAGTTTCTGCAGGCCAGCTGTGGAGTACAGGGCTCTGCCTGAGGGCTTCAAGCACCAGCTGAGTCGACGGACAGGTGGGAATCTAACCTGGCATGATGGGCGTGGGCAGAAAACCGCAGGAGGCAGGACAGTGAAGCTGCTGCAGCAGCCGGGCACAGAGGCCCTGCAGTACCGTTCCAGTGACAGTTATGGGATATATCACACAAGCCCAACACAGCCCAGTCTGATCCGCCCAGTCGTGCTCTGGTCACAACAAGATGTTTGTAAATGGCTGAAGAAACACTGTCCACACAACTACCTAACCTACGTGGAGGCGTTCTCCCAGCACGCCATCACAGGCCGTGCGTTGTTGCGACTGAAtggggagaagctggagagaaTGGGACTAGTGCAAGAAACACTTCGGCAGGAGTTGCTGCAACAGGTGCTGCAGCTTCAGGTGCAGGAGGAGGGACGCAACCTGCAGCTGCTCAGCAGAAGCGAGGGTTCCTTTGGAAGGATATCATAGCCAGATTGCTTGAAGAAGTGGAACTTATGGGATATTTAcccaaataaaaatgtgaataaGATCTGTGGGATAAATCCATCCAGCGAGCAGCAATATGAGTTCCAGAGGGATGTTGTTGAGTGGAAGTTGGCAGCTTTTCATTCCCTCTCtgcacaacaaacaaacaatctttACGGACTGCCTATGAACTGTGATGAAAAAGCACGAGACAATCTGCTTTGTCAATTTATTGCTCTATTCTGTGATTCATTATTAACCAtttctctcttactctctctacctctttctctctctgttaagtttttttatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65579 lncRNA downstream 78652 12243202 ~ 12244833 (-) True G49115
TU65582 lncRNA downstream 109944 12211743 ~ 12213541 (-) True G49118
TU65583 lncRNA downstream 109944 12211743 ~ 12213541 (-) False G49118
TU65570 lncRNA downstream 176452 12146728 ~ 12147033 (-) True G49112
TU65542 lncRNA downstream 182071 12140935 ~ 12141414 (-) True G49092
XR_005639120.1 lncRNA upstream 19435 12351427 ~ 12368708 (-) True LOC120558423
TU65653 lncRNA upstream 39829 12371821 ~ 12373308 (-) True G49178
TU65652 lncRNA upstream 43345 12375337 ~ 12375562 (-) True G49177
TU65654 lncRNA upstream 44296 12376288 ~ 12376976 (-) True G49179
TU65655 lncRNA upstream 44987 12376979 ~ 12380785 (-) True G49180
XM_039799415.1 mRNA downstream 144 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 3659 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 3659 12306258 ~ 12319826 (-) True uckl1a
XM_039799385.1 mRNA downstream 43448 12271487 ~ 12280037 (-) False nkain5
XM_039799384.1 mRNA downstream 43448 12271487 ~ 12280037 (-) True nkain5
XM_039799419.1 mRNA upstream 57011 12389003 ~ 12391677 (-) False fkbp1aa
XM_039800420.1 mRNA upstream 60263 12392255 ~ 12410148 (-) True mfsd2al2
XM_039801994.1 mRNA upstream 80229 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 80229 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 80229 12412221 ~ 12415046 (-) True fam110a
TU65587 other downstream 100483 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 154276 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 195060 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 195060 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 432439 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 56989 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 87794 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 920420 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1808388 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2200132 14532124 ~ 14534605 (-) True G49766

Expression Profile