RNA id: XM_039799420.1


Basic Information

Item Value
RNA id XM_039799420.1
length 3918
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120558426
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11835663 ~ 11841573 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGGATGATGTGTTAAATTGCAGGCTACCTCCTCTGTTCTTTGGATAATTATAGGATTTATGGCCACAGCCATGGCCTCAATGGTTGACATGACATTTTGAGCTTGGATGGGGAGGTGGAATTGATTTTTAAGTTGGTGGCTGTACAAGGCAGTGTGTTGCAGTGTGGATGTAATGGTGTGTGATGgcaaagagagggaggggtgcACTGGGAAAAAGGGAGGGAGTGCAAGAGAGAGATAGGGAGACATATGTGGACGACTAGAGCGCCTCTGGAGAAAGACATTCATTTGTGATTCTGGGTTGATTGCACCTGCTACCACGCGAGAGTGAGAGCTGCCTTTTGCAAGTGATGGCATCTTGTTTTGTGCCTCTGGAGTTCAACTGAGTTGTGGCCACAGGACTTAAACACAATGGAGAACAACACAACCGTCTTTCGGGAAGTCACTCAAGTTGTAAATCGGACAGAAATACCTCTGAACCCTCTTGAAGAGCAGGCCATTACAATATTTTTGACATTGCTCATCTGTGTAGTAGGGATTGCTGGGAACATCATGGTGGTGCTGGTTGTGCTGCGCACCAAACACATGGTGACCCCGACTAACTGCTACCTCGTCAGTCTGGCTGTCGCAGACCTCATCGTGCTCCTGGCTGCAGGGCTGCCTAACATCTCTGATGTTGTAGCCTTCTGGATATATGGATACACAGGATGCTTGTGTATAACTTATCTTCAGTACCTGGGCATCAACGTGTCGTCCTGCTCCATCACGGCCTTCACCATCGAACGATACATCGCAATTTGTCACTCCATAAAGGCTCAATTCATATGCACCGTTTCCCGGGCCAAGAGGATCATAGCTGCGGTCTGGGTCTTCACCTCGCTCTACTGCATTATGTGGTTCTTCTTAGTGGACACGGAAGAAACCGTCTACACCAACGGAGTGGTGGTAACTTGTGGTTACCGTGTCTCCAGGAGCTTGTACATGCCAATCTATTTCTTGGACTTCACTTTGTTCTATGTGATCCCCCTTATTGTGGCCATGGTGCTGTACGGGCTCATCGCCAGGATTTTGTTCATGAGCCCCCTGCCCTCGCATTTGAACGACAGAGCCGGAGGAAGCTCGGTTCACCAGGGTCACTCCAACACCACTAGCAAGGCCAACAAGGGTGCGGTCTCTGCAAGGAAACAGATAACAAAGATGCTGGCTGTGGTGGTCATCCTCTTCGCCTTGCTTTGGATGCCTTACCGAACACTGGTGGTGGTCAACTCCTTTATCGACCCGCCTTACCACAACACCTGGTTCCTGCTCTTCTGCCGTATGTGCATCTACACCAACAGTGCCGTCAACCCCATCATTTACAACCTCATGTCTCAGAAGTTTCGCGTCGCATTCAAAAAGCTCTGCAAGTGCAACTGGCGACACAAGGAGAAGGCGGCAGAGTACAATGTGCCAATGTATTACAGCGTGATAAAGGATTCTTCCCATGAGAGCAATGACCTGGTCACAGAGCAGGAGGAAGTGAGTCAAACCAACAAAAGGCTCAACCAAACCGATGATGACGCAAGCACTCTCAGTATTTCTTAATAAAGGCTTTGATGAGTTTGTTGGCTCTATTCTATTAGGATCAGGGCATTATTTGTGTTTAAGATTGCTGTCAGTTCCACCTGTAAGAAAAATGATTTACTGACGCTGAGATCTGTAgacattttagtttttgcaGTGAGACAGGTTGAATTTGTGGTGTAGTAAACTAGTTGTGGTACTTTTGCATCAGTATTGTAACTGTGTTGTAAACACAGCATGTGAGACCATGCTTTCGTGTGTTTCACACTGCTTAGTGGGACATAAAGTGCATCATAATGTGCATTGCCATTGCACAAAAATGACTCACTATTTTAATGCACATAAAAATAGAATGACTAGGAAAGATGGACATTGTGACATGTTAGATGCATTTTTGTACATATTTAGAATTTTGAGACTATGTCCAGACGTTATGTTAACTCGTTTTGACTAGTACCAATACTTGTTACGTATGTGCAACACTGACCTATAACATTATCAGCATAATGCATCTCTTGATGACAATTGCACTTGTCCTTTTCATTGTGACACTCTCTGGCTGAAGTGTACTCAAATAGACCACACTTTTTGACAGCACTTATGAACACAGTCCAGATTttgccttcttttttttaaaccccacTTAATATTAACAATtcagacaacaacaacagagagggagagagagagagttttcacTGTGATGTATGTTTCTGTCTGTGGCCCTGAATGCATCACATCCAACCTGTATCTACCAAACTATTTTGGTATTTAATCAAAAAGGTTAATTGGTGAACGTCATCTCGCGACGTTAACCTGCCACGCTATCATCAACACTTTGGTGGAAATACCTCAACAACTGTTGTATTGACTTTCATGAAATTTTGGACTAATATTCTTTGTTCCCAGATGATGACAGGCTTTGGTGATCTGACTTTTTCTCTAGCACCACCACAAgtccatgaggttgacatttgtggtttggaGTGATGTTGTCTTGACAACTGTATTGGCTGGCATAAACATTagttcagacattcatgttcctctCACAATGAATTGGCAAATGTAaggatgctaacatgctaaacgtAGATGTTGAACATGGTAGGTTACACTTTAtgcctgctaaacatcagaattgttaacatgttagcatgctgacgttagcattttAGCTCAAAGTATCACTGTGCCTATAAGTACAGCTTCACTtagtcttatttatttatttattcattcataagCATCAtgatcatactgtatataagtCAACAGTATAGCTAACCATCTTCTACAGACAGCTGTAGgctggcatggttttatttggAAGGTCAGCTAGGCTAAGTAAACACTAGCCTCTACACAGCCATGCTCCACttacacaggtgttttcactcaTCTTGCCCGATTAGACCGCATCTCAGACCTGTGTGGGCGTGTACAGACTGTTTGATTGGCATCTTCTTCACTCTCCTGTTCGAGTGGTTACACCTGTTAGTGAGGGAGCATTTCAAATCTTTCCTTGTAATTGTTATAATTATTCGGGCATTTACTGCTGACAGTAGAAAGATGACAGCAGGAAATGAGTGGAGAGAGACATGAGGAacgacatgcaacaaaggtccagACACAAACGGAGGACGATGGGATTTATGGTTGTCACCTTGACTCTTTATAATTAATAAAGTTTGGCGTTTATGCCCAGAATAGCTCCAGCTAATTTCACTAGAGTTGATATACCAATTATGCTCCTCTTTCACTCCTTTGAAATTGTCACAGAATTTACTTATTCTGCAAtccaaaaactaaaatgtaaacAAGCCCTCTGTCAGCCCTTCCACTGAGTTTATTTCTGACTCCGAAGAAATTCTGCGTTATAGAAAAAAGTTTGTATCATTAGATTTCCAGTCTGCCAAACTGTGAGGCAGGAGGTAATAACCATGGAAACAGATCAGTTCCAATTCAACACATCGGCCAAGTCAGAGAATGAAAATAAAGTTGTCCTTTTGACGGGCAACAAAACTGACAGCAAGTGCATTTTAGGAAAAAAATGGGATGTTGTTGCCAACGAGTTTGCTGTCCCCCTTGTCTTATTGCTGTCGTCTTCATCATTACTGCATGTCTCTGCATCTCAACATGCCCATCTCTACAGACCTGTGTATAAATCCCTTTCACACTTGGCCAATATTATCTATTCTGTGTACTGTGCATGTTTGatcttgtgtttttaataggCTTTGTAGTTTCATGTGGATTAACAaatctttttaaatatatattcttaaatgtaaatgtatacaTCTAATAAATGTGTACATTGTCTTTATTCATTAGAGTTGTGTGTGTCGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65307 lncRNA downstream 219954 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 229049 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 235155 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 256675 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 262674 11564071 ~ 11572989 (-) True G48903
TU65449 lncRNA upstream 44392 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 117806 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 161694 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 278085 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 278179 12119752 ~ 12121550 (-) False G49084
XM_039800928.1 mRNA downstream 10446 11818150 ~ 11825217 (-) True LOC120559301
XM_039800949.1 mRNA downstream 29219 11784803 ~ 11806444 (-) True spats2
XM_039801332.1 mRNA downstream 85054 11746307 ~ 11750609 (-) False ormdl2
XM_039801331.1 mRNA downstream 85104 11747712 ~ 11750559 (-) False ormdl2
XM_039801330.1 mRNA downstream 85978 11746307 ~ 11749685 (-) True ormdl2
XM_039801842.1 mRNA upstream 3138 11844711 ~ 11848087 (-) True LOC120559814
XM_039801624.1 mRNA upstream 13477 11855050 ~ 11863694 (-) True slc13a3
XM_039799397.1 mRNA upstream 24134 11865707 ~ 11871461 (-) True LOC120558412
XM_039801194.1 mRNA upstream 36779 11878352 ~ 11880620 (-) True tcf15
XM_039801936.1 mRNA upstream 47244 11888817 ~ 11891139 (-) False srxn1
TU65038 other downstream 1180845 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1809838 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2111529 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2137556 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3729468 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 47368 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 285313 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 285313 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 308221 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 379164 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile