RNA id: XM_039799435.1


Basic Information

Item Value
RNA id XM_039799435.1
length 3564
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120558430
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12685286 ~ 12697057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCCCatccagaaaaaaatattttctaccTGATGGTGTCTGCAGAGATATCTAGGCTATACTGATGATGTCTATACATCGATTTAAATGTGTCACATTTTAGTAAGACCGGCAATTGGCTGATATTAATTTAATATCCTATTTTCAGTGGTCGGCGTCTAGCCAGCCCGAACCAAACAGAACAAGGGGGAGTCGCAGGATTATACCAACTTAAAAGACACATTTGGGGCATGGAGGTCAGTGCTAAAATTAGAGGCTGCTCCTTCCGCGACAGTAGCCAAACTGCGATGCATAAAGTCATGTCAACCAGGGGATACACTATCACAAGAGCTGGCAGTATATAGGCATGTTTTCCATGGGTGACATTTAAACGCCACACGTTGACTAAAAAGAGCTTCTGTGCGTAACGCAGAGACAGCGCTGGATCTACACTGCTGCGCAAATAATGAGTATTTGGTAGTGCTTTTTTGGAGACGCCATATGTACTGCTCTCTTCGGCGCACAGCTTCCATGAGTGTACATTTCtgcaaaaatgtcttttttatcCATACCAAGTCAAGAGGGCACTTTTACCACGATTAAAAACGGCAAATCAGCCGAGCAGGCAGGGAGTAGGTCCCCCATGGACAACGAGGATCAtaatgatgacgatgatgaggAAGACGATGACAGCGAGGACGTCCGCCTCATCCCGAGATGCTCCCCGGTGCCCAGAAAGCGAGGCCACTCCATCCACGATGAGACTGCTGAGTATATGCAGATACAATTGGCGCTGTCTGACCGAAAGAGAGTGTCATTCGCCGATACAACAGGTGGGGATCTGGTGGATGTGAAGGAATTTGCTGCCCTTGATTCGGACGAGGAAGAGGATATTGCAAagtgggaggaagaggaggcaaaGTATCGGAAACCAGAGCGAGAACCGACCTATCATGTGCAGCCAGAGTTTACCGTGCCCAGCAGCAGTGCCCTGCTGCAGGCTGTGCACTCTAAAAAAGTGGAGGTTGAGCAGATGTCTCCAGCAGAGAACGAGCCACTTGCCTTCAGTGGGGTAATACGAGTCTTGAACATCTCCTTCCACAAAGCAGTTTATATTAGATCCACAATGGACAACTGGGCTACTTACTTTGATCACCCAGCAGAGTATGTCCAGGGATCTCATGATGGGTGCACTGATCAATTCTCCTTCAAGCTGTCTTTTGCACCCCCTTATATCACCCACGGCTCTCGCATTGAGTTTGTTGTCCGCTATGAGACCTCTGATGGTGATTACTGGGCTAATAACTCCTCTATGAATTATGTGGTAACTCTGCTCCTGTCATACGAAGATGATTTGGCTCAGACAAACGACATACAAGAAGTAAGAGGTATCCTGAAACCTCCAAAAGTTTACAGtATGAAAGATGATTTCGATTCAGAGGATGAGCAGGAAAAGGACAAAGAAGAAGCAGGGACCTCGAGGTCCGGACCTACAGCTGTCTGCCCAGTCATCGTACAGCCGGAGATTGACATAGAGATTGCAGTTCACCAATCTGGTCCCTGTGTCCCACCCAACCACCAGCTTTCATCTGTTGATGGCAAACTGTCCGCTCGCACTGTATCCTCAGGCGAACAATTCCCTTGTATGTCTTCCGAAACCCCACTTCAAACCGCTTCATCCTTTGTACTCTGTACCAGCGAATCGGCCAAGCCAAATAAGTCACAGCCTTTACCCTTACTCCAGTGTGAATTAGGCAACCAAACGTCAGAGCAGCCCATAGACAGTAGTCCCTGTGCCCTGCTGCCTGCTTCAACTCCCTCTCTGCATCGAGAGTCAAGGCTGAGATCAGACAGCTCCCAGGCTGGCGGAGAGGAAATCCCTCCCTCCGACGCCTCATGCATGCAGCTTGCTACCATGGAGACAAATCTGTGGCCAACGACAGGAGAGGACGGATCGCCCGACAGCCCAGACAGTCGTCCTTGTCTTGAACGTCCCGCCGAGGGCGCCTGTGCTCCCGGTGTGACTCAGGGCTCCGAGCGAGAGGTTGCAGTGGGATCGAGTGAACTCGGTGCGGGATTATCAGAAGGTTGCACCAGGTCTGCAGCAGATCCTGAAGGCAGTACGCCTGCACTCGTGTCTCCTGTGGCTGAGGGTCAGGCATCTCTTGGAGCAGAAGGTGAAGCTCCACCGTCACCTGAACCCACAGAGAACGCGAGCCAAAACGTAGCTCGGTCTGCCTCAGCCTGGGAAGAGAAGGAAGACGTTCCCCAGATTCCCCCTGACTCGTTATTAAAGAATCTACCTAACACGCTGTCAGAGGTTTGCGAGCTGCAGTCGCAGCACGACGCAAACAGGATTCTGAAGCCATCCATCATCTTTCTGAGTGGAGTTGTCTCCCTCTCGATAGTGTTGCAGGAACCCAGTGCCCTCTTTATCATCGGACTACTTTTGGTCCTGCACCGTTTGTGATTACGCCACAAAAGTTCATTCTGATCTGTTCATTCTGGAGTGAAGTGCCTTTTCGTGATTCTAAAATATGCCAACAAGCTTAACAATACACAAATGAGTCTTCTGTTGAAGTTGTGTATCACTGTGTACGTTTTGagattagtttacattttcaggACAAGAAAGGGTACAATGTTTCCAAAGTCCAATGCAAGGAGAAAGTAATTACACAAATACTGGCGATATTTTCATGCATTCTGTGAAACAAGTGTGTAGTAGAATAGTAGTCCCCATTTCTACAACATTGTGATCCCTCTAATACTAGATCACAGTATATTGTCAGAGATGTTTTGAAAGTGGTCCGTAATTACTTTCTTCTTGTCATGTGGAGATAGTGTATGTGGTGTTATATTCTGATGTATTCAATCAGTGCTATTAtacacttgtttttttgttccatTGTTGTGAGTGTAGCTAAGGTTGTTGTCTAACCTCACTGCCATGAGTTTAACTTTTGTGAATTCTATGTGTTGTTATGGCTTTAAGAAAGattgctcagttggtagagcggcccatatatagaggtttactcctcgaatGCAGCGagcccgggttcgactctgacctgtggccctttgctgcatgtcattcccccctctctctctcccctttcatgtcttctgctgtcctatataaataaaggctgaaCATGgccaaaaaaagaatctttaaaaagaaaggaCAAAAACCATTACCATACTGAGACTTGTTATACAAATGGAATTGTGTTTACAAAATGCAAAAGCAAAACTTGCTGtttatgtgatttatttttgccccaatgcctaaaaaaaaaatgacctgCGGATGCTGCTTAAGGGACAAACGTGGAATACCGTCCAGTCATATTTACCATTAGAGAACACCAGCCTCCTCACTATTGCACACTGCATTTTGGTAAATCTTCCTGTTGATTCTTGCTAGTAAACCCATATTGCTGTTGTTGCACAACATGAAATACTACAGAACTACTTTGACACCCTCACAGACAGACTGAAGCACTGATTGACATGTTTGAAGTGATGAAAGTTTTTGCAGTGTATTGCCATTAAACGTGGTCCTTTATCCTGTACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639121.1 lncRNA downstream 24044 12660452 ~ 12661242 (-) False LOC120558434
TU65777 lncRNA downstream 24046 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA downstream 24046 12660048 ~ 12661240 (-) False LOC120558434
TU65658 lncRNA downstream 298062 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 304501 12376979 ~ 12380785 (-) True G49180
TU65826 lncRNA upstream 3372 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 71763 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 78860 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 140463 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 223944 12921001 ~ 12924328 (-) True G49407
XM_039799439.1 mRNA downstream 5621 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA downstream 6711 12674387 ~ 12678575 (-) False LOC120558433
XM_039800100.1 mRNA downstream 49736 12614941 ~ 12635550 (-) False LOC120558830
XM_039800098.1 mRNA downstream 49736 12614941 ~ 12635550 (-) True LOC120558830
XM_039800029.1 mRNA downstream 173714 12504401 ~ 12511572 (-) False gpkow
XM_039801820.1 mRNA upstream 24997 12722054 ~ 12728769 (-) True wasb
XM_039801822.1 mRNA upstream 32335 12729392 ~ 12739824 (-) False LOC120559801
XM_039801821.1 mRNA upstream 32335 12729392 ~ 12738587 (-) True LOC120559801
XM_039801824.1 mRNA upstream 32335 12729392 ~ 12735973 (-) False LOC120559801
XM_039801819.1 mRNA upstream 43684 12740741 ~ 12744322 (-) True apex2
TU65695 other downstream 246561 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 293615 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 462284 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 516077 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 556861 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 555355 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1443323 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1835067 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2148281 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2148281 14845338 ~ 14853817 (-) False G49845

Expression Profile