RNA id: XM_039799440.1


Basic Information

Item Value
RNA id XM_039799440.1
length 4095
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120558433
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12674387 ~ 12679665 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacaccagaggtGATTTTGACACCTGTTTATCCGTTTTTCACTCCAGCCTGTCAGGCCTAGCTGACATTGGCAGTCATCTAATCAGGTGAAATGCTATTTGTCAAGGTGGCAGAGGGCTGTTATGTATGGATGAAAATAGGCCCCCAGTTACAGCAGATCATATTGTGTTTTATGGCCTACATAGGCAAGGCCCACCCAGACAAGCACACAGCTATGTTTTATTAACAGCGTACGCCTATACGTGAGTTTTCAGAAGAGGCTGCACCTtgaaattgtgtgttttttaaattgaattttcatgtttttaatcATGTCTTCTTTAAACATGGCTGGTTGTAGGCTCTTTGCTAAAACACTGAGGCCATGATAATCACAATGATAACTTGCTCCTCCTGTTGAGTAAAATTCACACACATAGGCCTATGCttaaaaaacaaccacaaatgGCTGCCTGCTCTGCCATTATATTCTCCCATTTGTTAAGTGCTGTGAATGGCACAGATTACACCCTCTGCTCTTTAACTGACTGTCACGCACAAACGCACGcacagagcagcagagagaaagcATAAAATGTTCTTTGCTCATTTACAAGATCTCTGTTTGTTGGACATGCCCAGTGTTTGGTTGTACTGTGTCTGCTCCCTCCTGCTGTACACCCCCATGCATTCACTCAAACACCCACACTTGCACAAAGTATGTGAGCTGTTGTATCTTAGCAACGGGCAAGGTAATTACTGAGAGAGCCAAGGAGCTGGCATGCTGTAGAGCTGCTGATCTGATCCCAGCCTTAGAGAAACAGGAAGGCAAAGATTTCCTCTGTGTTGCCCAACACATCACTTCTTTATCCATGCTGCTAAATGTGGTGAGGTTGTGGACAAAGAGGAAAGATGAATCTGTCATGTAGAAAAGATCCTTACGGCCTCTCCTTGTAAAGACGAGAGCGCCGTGGGAGACGACGGCTGTAGCAGGATCAGTAGTGTTTATAAAAGGGCCAGGCCGAACCAGGCGGGCTCTTGTGGAAGGTAATAGAATGGCTAACCAGAGCTTTGCCATCGATGGCCCTGGCAGTTTGCTGGCTGTGCTGGCTTCGCAGAGTGGAATGGCAagaggcggcagcagcagcagcagcagcagcagcgacgGCAGCGGCAACAGTGGAGGAATCTCTGCCACAGATGTGTCTGCCTACTTTAAGCTGGTCTTCTTGGGTTTGATCATCTGCGTGAGCCTCGTCGGCAACCTCTTGGTGTCCCTGCTGGTTCTACGAGACAGGACACTTCACAAGGCCTCCTACTTCTTTCTCCTGGACCTGTGCCTGGCAGATGCAGTCCGCTCGGCCGCCTGCTTCCCCTTTGTGCTGGTTTCCATCCACAACAGCTCGGTCTGGACTTACAGTGCCTTGAGTTGTAAAGTTGTGGCTTTTATGGCTGTGCTGTTTTGTTTTCACGCTGCCTTCATGCTGTTTTGTGTGGCTGTCACCCGCTACCTTGCCATCGCCCACCACCGATTCTACGCCAAGCGCATGACCATCTGGACCTGCGCCGCCATCATTTGCATGGTGTGGACTCTGGCCGTTGCCATGGCGTTCCCACCTGTCTTCGATGTGGGGACATACAAGTTCATCCGTGATGAGGATCAGTGCATTTTTGAACACCGCTACCTGAAGACCAACGACACCCTGGGCTTCATGCTCATGCTGGCTGTGGTGGTCCTGGCCACGCACGGCTTCTACgccaagctgctgctgtttgagtACCGTCACCGCAAGATGAAACCTGTCCAGCTCGTGCCAGCGATCAGCCAGAACTGGACCTTCCACGGTCCTGGGGCCACAGGTCAGGCTGCAGCTAACTGGATTGCAGGGTTCGGTCGTGGCCCCATGCCACCCACTCTGTTGGGCATCAGGCAAAATTTACACAATCAACACCGGCGGCTGCTCGGGATGGAAGAGGTGAGGTCAGAGAGGAGGCTGGGCAGGATGTTCTACACCATCACCCTGCTCTTCCTGGTCCTCTGGGCTCCTTACATCGTGGCGTGCTTCTGGAGGGTGTTCGTCAAGTCCTGCAGCATCCCTCACCGGTACCTCTCCATCACTGTGTGGATGAGCTTCGCCCAAGCCGGAGTCAACCCCATCTTCTGTCTCCTGCTCAACGAGGACCTGAGGAAAGTGCTGAGAGCTCACCTGCCCACCTACTGGAGGACTAAACAACACCTTCCCCAGGATGAGGCCTACTGCATCATGTGATAAGATATATGAGCATAATGAAGGGaatgtttcatgttttaaagGGAGAATTTGGAGAGTAGAAGTGATGTAACGCACCTTGGTTAAgtgtctgttttgttgttttgcacaACAAAATCAATTTTTCGCCAAACAAATGCAGGCACAGCTTATTAAGAATGTTGATATTTGAATATGTGTCGGTTGCAGAGGTTTGAGCAGGGCAGTAGAAAAGCCCTGGTAACACTTTAATGGTTTGTATTTCTGATGATGTACTGTATGATTAataaatagtgataaaaaaaaatcacaactaTCACCGCTCCAACTCCAACAAAGTGTGACGGAtgccatttttaaaataatgttgccTTATTTCAATGGGACACGCCCCAGAGCTTTCAACTGAGAATGAGTTCCTGTGTCACATGAggcacaaaacagacacacagagggtTGAAATCCTTGAAAAAAATGCGCTGCGGAATGTGAAAAGAAAGTGTTGATCAGAGCGTTACTAACTCTGAAACACATCAAGGAACTTACAGGGTCTGAATGGATTGATAGACCACCCCGGACGCCTTTTCATGTAATTCAAAGGAGACTGCAGAATATCGAATGGACCCAATAACCTTGGATACATTTAAATAGCTGTTGTGAACCCGAGAAGCCCCTAACATGCTTGGTTTTTTGGACTTGATTTAGGGTGTGTCAGGTTTCTTTGTATCATAAAAAATTGCCTGTTTTCCTTCATTTGTAAACTATACATGTTAAGCAGATGACACTATTTTGAAATATGACTTGATTTCATATTGTACAGACTGTACAGGAATGTATATTCctgcttgtgtgtttttatatagcattcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagagagagagaggaagaggtagacagagaggagaggagaggagggagaaagatgaGAGAAATAATGATGATAGAATAGGTTCCAGTAATATTGAGTCAATATGAAAGCAGCCTCATCTTGGAGTCTTAAAATCATGCTTCGTATGGAAATGTATCCTTTAAATGGATTTCCGTAACTGGACATGTAGTctgatttgtttaaaatgtgaaGTACAGatggattataaaaaaaaaagagggccaAATAATAATcagaaaacaacacaacagGCCAGAGGATTTAATGACTTGAAAGATTATGTAAATTACGtcgttttaaaaaaatcattagcAAATGAACATTTATTTGCAAATGATGATCTTGGGAATGTTTTTAAAGTACTGTTATGCTCTCAccagaatacaaaaaaatgaagaaatgaaGTGGCACTTAATGGGAAGGAAACTTGATTGTTACCAGGCCCTCTTATAATTCCCTCCCAACATAAATGTCACCATTTGAGTGTCCTGGATCACAGGAAGTTCAAAATCCAAACGTCTTCAGGCTGGACCACAGAGATGTTTGGTGTGTGGAAACCGGCTTAAAGTACATGACGTTGTCTTTCCAAATTAAGATTCATGTAAGACAAATGCCAGACCTACAGTACGTTAGGCATAGATATATTTGTGCTGTCAATTTTCTAAATGTGGACACTTGCACAGCATACTGTATTAGCATGCATTCCACTGCATTTCATAGATTCAAGACTGGGGATTACAATTTGTACAGATGTTGATATGGAAAGACAAAGTAAAACGGGAACTGAAGTCCATAATTTTTATGTCTGGCATTCCTTCGCGAGATGATATTCTGTAACTGTACAGTTTAACTGAGGTGGTTCTTTTGCCCACTCATCAATAAAGACTCTACTTTTGATGCATTCTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639121.1 lncRNA downstream 13145 12660452 ~ 12661242 (-) False LOC120558434
TU65777 lncRNA downstream 13147 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA downstream 13147 12660048 ~ 12661240 (-) False LOC120558434
TU65658 lncRNA downstream 287163 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 293602 12376979 ~ 12380785 (-) True G49180
TU65826 lncRNA upstream 21854 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 90245 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 97342 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 158945 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 242426 12921001 ~ 12924328 (-) True G49407
XM_039800100.1 mRNA downstream 38837 12614941 ~ 12635550 (-) False LOC120558830
XM_039800098.1 mRNA downstream 38837 12614941 ~ 12635550 (-) True LOC120558830
XM_039800029.1 mRNA downstream 162815 12504401 ~ 12511572 (-) False gpkow
XM_039800028.1 mRNA downstream 162815 12504401 ~ 12511572 (-) True gpkow
XM_039800034.1 mRNA downstream 174922 12494005 ~ 12499465 (-) True timm17b
XM_039799435.1 mRNA upstream 6711 12685286 ~ 12697057 (-) False LOC120558430
XM_039799433.1 mRNA upstream 6711 12685286 ~ 12697057 (-) True LOC120558430
XM_039801820.1 mRNA upstream 43479 12722054 ~ 12728769 (-) True wasb
XM_039801822.1 mRNA upstream 50817 12729392 ~ 12739824 (-) False LOC120559801
XM_039801821.1 mRNA upstream 50817 12729392 ~ 12738587 (-) True LOC120559801
TU65695 other downstream 235662 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 282716 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 451385 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 505178 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 545962 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 573837 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1461805 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1853549 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2166763 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2166763 14845338 ~ 14853817 (-) False G49845

Expression Profile