RNA id: XM_039799473.1


Basic Information

Item Value
RNA id XM_039799473.1
length 4993
RNA type mRNA
GC content 0.48
exon number 28
gene id nfascb
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13414941 ~ 13435506 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATAGACTGACTTTGTTCCAGACAGAAACGctttgtgtgagagagagtgtgcgtTCGTGCCAGCCAGAGTGAAGATACAAGGCTCTCAGGCCCCGTTTGCCAGGCGTGTGACCCAGGCTTGGGACAGCCGTCCTGACGGGCCACATGGGCCTCTGTTATCTCGCCTGTCACCTGCTTTAAGCTGATGGAGTGACACATAACACAAAAGCCAGATGCTGCTGGGAAAGGTGAAGCTCACTGTGAAGATGAGAAGAAAGTAGGAGTCTGCTGCCACTGCAACGAGGAGAAAAGGGGACCCAGAAGCTGAGAAAACACTTAAACTACATTCAAAGGGTTCTTGACCTGATATTTGAAGGACTGAGGCTTTTATTGGTATACTGCACAAACAAGAATAATTTCGGGTGAGAAAAGTCATTGGAATTATCGATGCATTGGGGAAGCTACAGAGATGGGGAGGAGAGAGCCCTGATTTGACTTTCCATGAGAGAGAACAGAGGAGTTGGTAAAGAAAAGAGTGGCTTGGTTCCATGCACTGTAAAGATGGGAACAGGGCTCGAAccagcgctgctgctgctgctgcttttatgGCAGAGTGTTTGGGCTTTCGACATCCCTCTGGAAATCAGGCAGCCTCCAACCATCATAAAGCAGTCAATGAAGGAGCATATTGTTGACCCCAAAGACACCATGGTCATAGAATGTGAAGCCAAAGGAAACCCTCATCCCATTTTCTCATGGAGGCGTAATGGCAAGTATTTCAACGTGGCACGTGACGCTCAAGCATCAATGCGCAGGCGCTCAGGGACGTTGGACATCTATGCCTGGAACAATCCTGAACAATATGAGGCAGAGTATCAGTGCATTGCATCCAATGAGTATGGATCTGCATACTCCCACAAGATCAGACTACGACTATACAgaGCTCCTGTGTGGCCGAGGGAGGTTTTGGAGCCTGTGGTGGTCAGTGCTGGCTTGCCTCTGGTCCTGTCCTGTGACCCGCCACCAGGCCCGCCAAAACCTGAAATCTACTGGATGTCCAGCTGCTCGTATGCGAGACCTTTCAACTGGCCCATTCAGACAGCTTTCCCCACCATGCAGCCTGTGCGGCAGGACCGCAGGCTATCCATGGGAGTAAACGGAGATCTGTACTTCTCTAATGTCCTGTTCAACGATTCTGCTACTGATTACTGCTGTAATGCCCGCTTCCCCTACAAAAATGTCATCCAGCAGAAGATGCCCGTGGTTGTTAAAGTGCTTACAACTCGTACAGTGTCCGAGGCTGCCCCCACCTGGCTGTCTCCCACAGGCTTGTCCAGCTCCATTCTCGTCCTGCAAGGGGAAGAACTGCTCCTGGAGTGTATCGCTGCAGGAGTGCCAACTCCTCACATAATGTGGACCAAGGATGGTGACGACCTGGTGTTGACACCGCGCATGAAAGTAAAGAACTTCAACAAGATGATTCAAATCCCAAAGGCATCTTTTGATGATGTGGGTGAATACACTTGCACTGCTACCAATAAGATTGGATACATTGAGCACACAATAACCGTCAGGGTCAAAGCGGCTCCTTTTTGGCTGGAGAAACCCACTGATCTGGTCTTGGCCCCGGAGGAAAATGGACGCCTGGTGTGTCGTTCTGATGGGGCTCCTCGTCCCACTATCAGCTGGTTCATCAACGGGGAACCAATTGAAACTGCAACACCGCAGCCTAACAGACAGGTGGCAGGAGACACACTGACTCTACGCAGTGTGACTGCTGAAAACACTGCCGTCTACCAGTGCAATGCTTCAAATCAATATGGGTACTTAATGGCCAATGCTTTTGTCAACGTGCTACATGCAACGCCACGTATTTTTGGGCCCAGAAATGAACTCATCAAGGTGATAGAGGGCAGTCGTTGCCTCTTACACTGTCGCTACTTTGGTTCCCCGGTGCCTGAATTGCGATGGTCCAAATATGGACAGGGGAATCTGGAAGGAAATCGTTTTAAGACCCACAGTAACGGGACCCTGGAGATCAAAAACATACGGATAGATGACCAGGGAACCTACCTTTGTATTGTCAGCAACATCGCAGGAAGAGAAGAAAGTCAAGTCAGAGTAGAGGTAAAAGAGCCCACCTTAATTGTCACAAGACCACAGAGTATGAAAGTCATCCGTGGAAGTGATGTGCGCTTTGAGTGTGGTGTAAAAGCAGATGTCACTACTCCTGTCACAACCACCTGGATGAAAGATAAAAAATACGTCACTTTTGGCTGGAGAATCTCTCTGGATGAATCAAATCTGGTTATCACTAATGTAAACAGCGGCGATGAGGGCAATTATACCTGTGTCATCAAGAGTGAACTGGACCAGAAATCTGCCTCAGCACGCCTAATGGTGATGGatCGTCCAGATCCTCCCACTAAGTTGGAGTTGTCAGATCCATATGAACGCAGTGTAAGACTCAGTTGGGTCCCTGGAGACAGCAACCACAATCCTATAACAGAGTACATAGTGcagtatgatgatgatgactggTTGCCTGGGAAGTGGCGAAACCTCTCAAGCTACCCAGGGGACCTCAACTCTGTCATTCTGCACCTTACACCCTTTACCTACTATGAGTTTCGGGTTATCGCTGTCAATGCAATCGGAATGAGTCGCCCTAGTCGCCCATCTACGCGCTTCCAGAGCAGCGGTGCACcCCCAGATGTCATCCCAAAGAACGTAAAGGGTGTAGGTACATGGCGGAATAACATGGAGATCAGCTGGGAGCCTCTGACCTACAGAGAGTGGAATGGGCCCCACCTTAAGTATCTGGTGTGGTGGAGAAGGAGAGAATCCAGAGAGGAGTGGAAGAATGCAACCACTAAATGGGCGAGATACTACATCTACGATGCAGATACCTTTACTCCATATGACATCAAAGTCCAGGCTGTCAACGACTTTGGGCTGGGTCCAGAGTCTCCTGTTATCATTGGTTACTCTGGGGAAGACCGTCCCTTAACTGCACCCCTGAACCTGAGAGTGTCCGATATCGAGAGCACACAGGTGACTTTGCACTGGGACTCTGTTACACGTGGCTCTATGATGGGAGCACTGAAAGAATACAAGGCCTACTACTGGAGGGACAGCAGCCAGCTCAGGTGGCTGAGGGTCAACAGAGGGATGAAATCAAAATCCTTTCCAGACAATGATCCAGAGCCCTCTGGGGTACTCACTGGGCTCATCCCCTATAGCAACTACAAGATGTATATAGTGGTGGCAAACAATCGATATGAAGGGCCACCCAGTAATAATATACACTTCTCAACGCCTGAAGgagtGCCATCTGCTCCAAGATCCTTCAGGATCCAACAGCGACATCTGGACAGTATTTATGTCGACTGGGACCTGCCAGCAGAACCCAACGGTATCATTACTGGATATTCCCTCAAGTACCAGACAGTGAATGCCACCAGGGGTGAGGAGCTGCGGATAGAAGAGTTCACTCCAAATATAACAAGTTTCTCACTCCGGCGATACGACCGCTACACTCGATACAGATTCTACGTGGCGGCAAGAACTCGGATAGGGATAGGGGAATGGCATACGGAGGAGTCTCCCCACTACACCACTGAAACGTATGCTCAGGACCAGGTGGACATCTCCACTCAGGGCTGGTTTATCGGGATTATGTGTGCTGTGGCTCTCATCGTGCTCATCCTACTCATAGTCTGCTTCATCAAAAGGAGCCGAGGGGGGAAATACCCAGTtcgggaaaaaaaagacatttcattGGAGCCAGTGGATGACAAAGATCAGGAGGGAACTTTTGACTACAGGATAGCACGTGTCTCCACTCTGCCTTACCCCCGGCGagaggaggaaagagggctTCAAAGAGGCCAGCCGTCTATGGAGGCAATGATAAAGCGATCAGACAGTGACGACAGTCTGGTGGACTATGGCGAAGGAGGCGAGATACCATTCAACGAGGACGGCTCATTCATCGGCCAGTACACAGGAACCAGGAGAGATGTCAGGGAGTTGGACTTTGGTGGAAGTCTGGAGCTGCACTCTCCAATGAATACCATCTACTCCCTGGCGTAAAAATCTAAAGTCAAACTGACTTCTTATTTATTATGTGACTTTACCATGCTTGTATCCTCCATCTTCAAATAAGAACACATGGTGCTTGTGGTTTGTCTGCAGGAGGGAACAGCTGGAGCCTGGGGTGCTGTTAACCTCTGTGCCCTTGCAGACAAAGCATCAGTCATGTATTTAAAGAAGAACATGTTGGAAGAGTTGGGACAATACTAGAGCTGAGAATCCTAAGCAGGCTTTACCTTTAGTGTTTCATGTcctgtaaatgaaaatgctgcaTGATTGTGCGCATGCATGCGCATGAGTACATGTTCAGTTATCCTGCCAATGCAGAGACACAGGCTGTGGAGGAGACAGAAGTGGATCAGTTTATCATGTTGATAAAAGCAGTTTCAAGGACCAACTTAACtactcttattatatatttttctttcagCTAATTTCAATAATGAGAGGtcttatttttgtgtgttggcTGTTTGAAATAATGGCAGCATACCATACTTTATGATCAAGGGAGCTACAAGGTACTTTAATGAACTTGCATACTCTTTGTTTTATACACTAGTGTTTATGGTGCAATGTGAGAGTATACAAGTCTTGATGGTGATAGGTGAAGGATAATACAATATCTCCAGGGACTAATGGTTCATATGCATGGTTCAGTTAGAGAATTATGCTCTGCTGGGGTGCAAGGTCACACCATTTGGGGAATCATCAAGCAGCCATAAACCAGCTCTAAAATCAGAAGTTGCTCATGTTTCTCTATGAACTTGCCTTAACTGTCTCCCAATTTCACTCACTATGGAGATGGATAGAAATCATTAATCTTAATCTAACCGTTTTAGTTTATTTGACCCCTAACATCATCTGTGTATTATCACAGTTATttctaaatgtaaataaagtggAAATATGTATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66102 lncRNA downstream 7498 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 36078 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 46568 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 57136 13355117 ~ 13357805 (-) True LOC120558463
TU66059 lncRNA downstream 102212 13308517 ~ 13312729 (-) False LOC120558437
TU66283 lncRNA upstream 220025 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 220025 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 311913 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 604229 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 683475 14118981 ~ 14125759 (-) True smim29
XM_039799478.1 mRNA downstream 1763 13406785 ~ 13413178 (-) True LOC120558461
XM_039799476.1 mRNA downstream 8757 13396016 ~ 13406184 (-) False LOC120558460
XM_039799475.1 mRNA downstream 8757 13396703 ~ 13406184 (-) True LOC120558460
XM_039799477.1 mRNA downstream 8826 13396703 ~ 13406115 (-) False LOC120558460
XM_039801265.1 mRNA downstream 70988 13339493 ~ 13343953 (-) True LOC120559526
XM_039800978.1 mRNA upstream 2083 13437589 ~ 13443946 (-) True LOC120559331
XM_039800979.1 mRNA upstream 9737 13445243 ~ 13447764 (-) True LOC120559332
XM_039801896.1 mRNA upstream 75145 13510651 ~ 13519559 (-) True LOC120559852
XM_039801895.1 mRNA upstream 78351 13513857 ~ 13519559 (-) False LOC120559852
XM_039800755.1 mRNA upstream 84978 13520484 ~ 13527197 (-) False LOC120559206
TU66001 other downstream 161469 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 976216 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1023270 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1191939 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1245732 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 704874 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1096618 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1409832 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1409832 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2845538 16281044 ~ 16283856 (-) True G50217

Expression Profile