RNA id: XM_039799477.1


Basic Information

Item Value
RNA id XM_039799477.1
length 5632
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120558460
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13396016 ~ 13406184 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAGCACAACCACCATGAGAAAGCTATTTCTAATTACAGTGTCATCCACCAGACTGGTGTGTTATTTCACTAACTGGTCCCAATACCGTCCTGGCAATGGGAAGTTCATGCCTCTCAATATTGATCCAAACCTGTGTACCCACCTGATCTATGCCTTTTCTGGTATTAACGAGGCAAACGAGTTGGTCACCATAGAATGGAATGATGATGTACTCTATACATCCTTTAATGGACTCAAACAGAGGAATCCAAATCTTAAAACACTGTTGGCAGTCGGAGGCTGGAACTTTGGAACTCAAAAATTTACAACAATGGTGTCAACACAAGCCAACAGAAATACATTCATCCAATCTTCTATCAAACTACTGAGGAAATATAGTTTTGATGGACTTGATTTGGACTGGGAATACCCTGCTGGAAGAGGAAGTCCTCTGGAAGACAAACAAAGATTCACAGTTTTATGCAAGGAACTCCTAGAGGCCTATCAGTCTGAGGGAACAGCAACTGGCCGGCCCAGATTATTGGTTTCTGCTGCTGTGGCTGCTGGGAAAGGAACCATTGATGCTGGTTATGAAATCGCAGAGATGGCAAAGTACCTGGACTTTATCAACGTGATGACGTATGACTTTCATGGCACCTGGGAGACTGTGACAGGACATAACAGCCCCTTATACAAGGCAGCCCGTGAAACAGGGGACCAAGTTTACTTAAATACTaACTATTCCATGAGATATTGGCGAGACAAGGGAACACCTGTAGAAAAGCTAAATATGGGCTTTGCTACATATGGAAGAACATTTCAACTGTCTAGTCAATCCAGTGTGGTTGGAGCACCAGCCAGTGGTCCAGCTGCTGCGGGTGCTTTTACAAGAGAGGCTGGCTTCTGGTCCTATTATGAGATTTGCACTTTTCTTCAAGGAGCCAGTGTCGAGCTGATTGAGGATCAGAACGTTCCATATGCGGTCAAACAAAATCAGTGGGTTGGATATGACAACAAAGAAAGTTTTGCGACTAAGGTCCGTTACCTAAAGGATAACAGATTTGGAGGAGCTTTCGTCTGGGCTCTGGATCTGGATGACTTTAATGGAAGGTTCTGTAACCAGGGAAACTACCCTCTCACCAGCTATCTCCGCTCTCTTGTAGCCCCAGatcttcctcctcttcccacTACAGGAACCAACCCAAATCTAGTGACTCAGTCTCCACACAAAAAACCAAATCAACCTCATATCATACCTCATCCCAGACCAACAATCACTACTCCATCCAacaaccaagacaacttctgtgCTACAAAGACTGGTGGGGTTTATGCCAAACCTGATGCCCCAGGTTACTTTTACAATTGTGCCAATGGCATCACCTGGATCCAAAACTGCCCAGCTAATTTGGTCTTCCAAGATAGCTGCAAATGCTGTAACTGGCCCTAAAAGCAGGGGCGGATTTAGTCATTTTGGGGCCCAAGGCAAACACAGACATGGGGCCCTCTACATCTCTTGTTTCCCCCCTTTTGTCCATCCTTATTTTTCTAAGAAAGTCCTACTTGTAACTTCTCTTCAGCAGTCTTCACACAGCAATGATGTCTAGACATCTGGAGTTGCAtctgtaagaaaaaaagaagaaaaaaaacacagaacattCTGTTTAACAGATGCATCCACTGTATTGTCTTTTTATAGGGAAGAGCTGCCATTGGTTGTCATTTACCTTGGTTGCCTCTTTGATATTATCTCTTATGGATCTGCTTGCTGCTACATGTTTGTGGACTTCTGTCTTGCGTTACTAAAGTGAGAAGAAACACACAAGACAATAAGTGATCAATTATGGAGAcatcattttaattaaaataacttaCCGTTTAAAATGTTTACCTTTTTTCCTTTCACTGACTTTCTCCTGCTCTCCCATTTTTTCTGACCATTTCTTCATTTCCCTTGTCTCTGTTTTTGCATCTGTCTTTCTCGTCTTCTCCCTTTGGTCTTTGCctgtctttttcttattctccCTTTGGTCTTTGCctgtctttttcttattctccCTTTGGTCTTTGTCTTTCTCCTccattttctatttgtatttgtcCGTCTTTCTCTTCATCTCACCTTTCTTCTATGTCTTTGTATTCTCTTCCGCTCTCTTGAATGTATTTATGTACATTGAGTTTCTTTGGCTTTCTCTTACTAATTAACTCAGCTTTAATGGGTGAGTAACAAATGAAGGAAATCTTGGgctgatctctctctctgttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgtctgtgtgtgagtgagtgtctgTATTGTCTATAATCTGACCTTGCGAGCTTTGGCCTCAGCAAATCTTGCTATCACTGATTCCATATCCAGAGACTTCCTGACTTCCTGCTCGATAGAGAGAACAGCTAGAGCAGACAGCCTGTCCTGGGACATAGTTGATCTGAGGTACGTTTTGATTAGTTTCAATGATGAGAAACTTCTTTCACCTGAAGCTACTGTAACAGGGAGAGTGAGGAGGAGTCTGAAAGCTATACTCAAATTTGGATATATGTCAAGTAaattctctttatatatatagtcCAGCATCTCAAATGGTGATGAGACATGTGGCGGGAATGACCTAACTGCACACTTTACCTCAAGCTTCAGATCTTCTGCATCAATGTCATCCATCCTCTGCTCTAATCTGTGGCAGCATTCATCCAGCTTCCCTTCCTTCTCAGTGCTTCTCATTATGTCGATTGAGTAGAGAAATCCATAAAGCTCATAGAAGATTTCCGTGTTGGAAAATCTGTCCTCTACTGTGACAAGAGCTGTATCTATTAGAGGTAGAAAAAAACTCTCTTTTGAAGAGCTCTTCTGCAGTTGACTGAACGTGCTCTGTTCCCTCATACTCAAACTGTTTGGTTTTTCTTCTCTGACGCACCTCAGGCCAGCTCATCTCCACCTCCAGCTTCTCTGCTATCTCCCTGGCATCTGTTTTCGCAGAAATCCTTCACTGCGAAATTCCTGAAGGAATTCTTTCACTGCCCTGATTTCTTCCCTCACTGTCTCGACTGAAACTTTGGGGCTCTGAAGGATCTTACTCACTTTGTTTACCTGGAACAAGACATCGTACCACACTATGGTACTCACCACAAAAGGCCATCTCTGCAGCTCCTTGCAGACGCTTTCAGCTGTTGAGACAACATCTGCATCTCGTTTCTCTGTGGCGTACTCCTTTAGAGCAGTTAATGCCTTCACGATTTCAGGCAGCTGGTAGCGAACAGCTTTCACAGCTTCAACTCTTCACTCCCACCTGGTTGTAGACAACGCTTTAAGTGTAAGATTCTTGACGTGTTCTTTGAGAATGGTCCAACGTTGAACTGAGGAGCTGAAAAGAGTGTAAAGTCGCTGTAACAGCCCAAACCTGCATCACCGACAACAAGATTCAGTGTGTGACTTCCACAAGGAACATATAACGCTTTGTCGTTTAATTCCAGCACTCTCTTTTGGACTCCCTGCTTTTTACCCTGCATGTTGCTCCCGTTATCGTAAGACTGGCCTCGACAGTTGCAAAGATCCAGTCCTAGTGTTTGTAGATGGCCTAAAAATGTCTCACATAAGCCTTTTCCTGTTGTGTCAAGTGCCTGAAGAAATCCAACAAAGTGCTCATAGATGGAGACACCCTTTGATAACTCACAATTAACAATTCGTAGCACCACTGAGAGCTGCTCATTGTGACTGAGGTCTGGAGTGCAGTCCATAATTACTGCATAGTATTTTGCCGTTTTCACTCTCTCTACAATTGCATCAGTTGTACATTTTGCCACAAGGGAAATAAGTTCATTTTGGATATGCTTGCTTAAATAGGTGTCAGTTAGCTGTTTTGCCTGAATTCTCCTCAGATGCTCTCGCATCACTGGGTCAAACTGAGCCATTAATTGCACTTGTCCAAGGAAATTTCCATTACCAGACTCGAACAATTTGTCTGAGTGGCCACGAAATGCAAGATTGTGCTCTGCCAGATGGTTTACAACTGCAATAAGTCGTCTTAAAATCTCTTTCCAGCGGTTTACTTCAAGAGCAATTAGATCTTGGTTTACCTGATCTatagctgtgtttgtttgtagttTCTGTGAAAGATTGCGCCAAGCATCCATGTTTGTGATGTGGTCTGTAGACCTCTCATGCTGTCTCAAGTGGGCAGAAAGATTTTTCCAGTAACTGAACCCATCCTCACTTAGCTGAGTGGCCTTTTCTCGGTTACCAAAAAAGCGGCAACAAAAGCACATAACACAGTCATTTTTTTCACTGTACATGAGCCAGGACCGCTTTACTTTTTCTCCATTCTTCATTTGCAGGTAATAATTGCTGCTTGTAAATCTTCGCCCCTCTTGATTTCTAGGATAAATTCTGTCGTCCTTGCTCTGAACTGGGCCTCTCTGCACTATTGAGCAGCGCTCTTTGTCAGTGAGATGTTTTGGCCAGAGTGCTGGGTCATCTTCAAGAGCAACACATTGGTCAGAATGACTGCTAGTACTCATTAGTTGTTCATTGGAATTGCCATCTTTTTCGTCATAGACGTCGTCATCATTATTCTCACGGTCACTGAAAGTGAACGCGGAAGTTTTGTTACCTGAAGTTGAAggctcctcctcatcctgtaAAGTTGCCTTGGATGTAACGTTAGCAGCAATATTGCTTGAGCAGCCTGGGCTGGCACTGTCGGCAGCAACGGGTAGCTCCTCCTCGCTAGCAGCAGTGCTAACGCTCGTAATGGTGGTTGTAGCGTTGTTGTCATGGTCAGCGGCGGGCATCACGAAAAAGTTTGTTAACTTCggcaatttttttaaaaacgttttacTTTCCTCCCGCTTCCTCCTTTTTTCAGCACCGCTTGGGTAGTTTCGCTTCATTTTTACTCTACTCTGTCACTCagtctgcacacacactctttgtctgtcactttcttttctccgtttatatgtcaatggtttttTGGCGCATTACACAGCCTTGTCACtttcgcacatgcgcagtaagtgaGATAATGGAATAGTCCAATGTAGTGAGTGAGATGGGGGGGCCCCCTCCGGTCTGCGAAACTAATGATTTGATGCCATTTTTCGCAAATGGAGTTTTAGAAATACATAATTTGCgaaaagtgaaaaaacaaaacaaccttaATTATAAGTTAATGGGGCCTTTTGGGGGCCCCTAGGTAGCTCGGGGCCCAAGGCAATTGCCGACCTTTGCCTAATGGTAAAGTCCGCCCCTGCCTAAAAGCTTGCACCTCATCAAAAGTGAGCACAAATAATTCTTGTTATTTACaagttaaagttttttttgtcaatttaacAATGGGAATGTAGTGCTTATGAgactatattttttttaagtgtaattGATTATCTTATATTTTCTCTTTCCTAAAACGGGTAATTAAACCTTAAGCATTAAACACACAATGGTAAACCTTAAGGATTTTCCGTTACACTGTAACTTAAAACATAACATATAATGTTGTAGTAGCCTATGGTctataatatgtaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639128.1 lncRNA downstream 17840 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 28330 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 38898 13355117 ~ 13357805 (-) True LOC120558463
TU66059 lncRNA downstream 83974 13308517 ~ 13312729 (-) False LOC120558437
TU66102 lncRNA upstream 736 13406851 ~ 13407443 (-) False LOC120558461
TU66135 lncRNA upstream 26404 13432519 ~ 13433095 (-) True G49514
TU66283 lncRNA upstream 249416 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 249416 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 341304 13747419 ~ 13748459 (-) False zgc:66479
XM_039801265.1 mRNA downstream 52750 13339493 ~ 13343953 (-) True LOC120559526
XM_039801957.1 mRNA downstream 68453 13307588 ~ 13328250 (-) False LOC120559881
XM_039801956.1 mRNA downstream 68453 13314105 ~ 13328250 (-) True LOC120559881
XM_039799445.1 mRNA downstream 87078 13308360 ~ 13309625 (-) False LOC120558437
XM_039801961.1 mRNA downstream 100943 13292514 ~ 13295760 (-) False LOC120559884
XM_039799478.1 mRNA upstream 670 13406785 ~ 13413178 (-) True LOC120558461
XM_039799473.1 mRNA upstream 8826 13414941 ~ 13435506 (-) False nfascb
XM_039799470.1 mRNA upstream 8826 13414941 ~ 13435506 (-) False nfascb
XM_039799474.1 mRNA upstream 8826 13414941 ~ 13435505 (-) False nfascb
XM_039799471.1 mRNA upstream 8826 13414941 ~ 13435377 (-) False nfascb
TU66001 other downstream 143231 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 957978 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1005032 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1173701 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1227494 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 734265 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1126009 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1439223 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1439223 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2874929 16281044 ~ 16283856 (-) True G50217

Expression Profile