RNA id: XM_039799487.1


Basic Information

Item Value
RNA id XM_039799487.1
length 3732
RNA type mRNA
GC content 0.47
exon number 8
gene id rarga
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20963746 ~ 21006268 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTTGGATACCCAAACAGCGGTGGAGACCCAGAGCACCAGCTCAGAGGAGATGGTACCCAGTTCTCcgtctccacctcctccacctcgtGTCTACAAGCCCTGCTTTGTGTGCCAGGACAAGTCCTCAGGGTACCACTACGGGGTCAGCTCCTGTGAGGGCTGCAAGGGTTTCTTCCGCAGAAGTATCCAGAAGAACATGGTGTACACCTGCCACCGAGACAAGAACTGTCAGATTAACAAGGTCACACGCAACCGCTGCCAGTACTGCAGGCTGCAAAAGTGCTTTGAGGTCGGCATGTCGAAGGAAGCGGTGCGCAATGACagaaacaagaagaagaaggatgtGAAGGAGGAGTTGGTGCTTCCAGAGAGCTATGAGCTAAGTGGAGAGTTAGAGGAGTTGGTCAATAAAGTCAGCAAAGCTCACCAAGAAACCTTCCCGTCACTTGGCCAATTGGGCAAATACACCACCaaCTCCAGCTCAGACCACCGTGTCCAGCTGGATCTGGGTTTATGGGACAAGTTCAGTGAGCTCTCCACCAAATGCATCATCAAGATTGTGGAATTCGCCAAGCGGCTGCCGGGTTTCACCACCCTCACCATCGCTGACCAGATCACTCTACTTAAGTCGGCCTGCCTGGACATACTGATGCTGAGGATCTGCACACGCTACACTCCAGAACAGGACACTATGACTTTCTCAGATGGCCTGACTCTGAACCGGACTCAGATGCACAACGCCGGCTTTGGACCACTCACAGACCTGGTGTTTGCCTTTGCTGGCCAGCTTCTACCCCTGGAGATGGACGACACAGAAACCGGCCTCCTCAGCGCCATCTGCCTCATCTGTGGAGACCGTATGGATCTAGAGGAGCCCCAGAAAGTGGATAAGCTGCAAGAGCCTCTTCTTGAGGCTCTAAAAATATATGCACGCCGCCGTCGCCCCAACAAACCTCACATGTTCCCCCGCATGCTGATGAAGATCACTGACCTCAGGGGTATCAGCACTAAAGGTGCGGAGAGAGCCATTACTCTGAAGATGGAGATCCCAGGGCCAATGCCCCCTTTGATCAGGGAGATGCTGGAGAACCCAGAGGCCTTTGAAGACCAAACAGAGGGCAGCGAGAGCCCGCCGccacctccaccaccacctccacctccaccaccaGCCCAGGTCAAGCAGGAGGCTGAGGACGAGGACGACAGCTGGGCCACAGAGAACGGCAGTGAACCATCGCCGGAGGAGGACGAAGACGACGATGAGGACGTGGGGGATGAAGATCGGGATAGGGGCTCGGACAGTGATGGGGAGCCCTGGGGGGTTCTGGATGCCATAGATGGGTCGAGGAAAGGCCTTGTTGGGAGGGCGCAGTGAACAGAGCATTtcgtacatacacacactcatgcacatacaggttcacacacacaaaacacacacacacacacacacacacacacacatacatagagacTTACAACACAacctcactcactcacccacCTCAACAAAATGCTGGccttccctcccccctttcGCTCTCCTTACTGCACATCACTGTGTCCTCCACTGCGGAGCACAGCAGAGCCTTATGAGACACTTCTAACTCAGGCCACATGGTCCATGACAAGTGAACTACAGAACATTAAAGTAAAGGAGAGATGACAGTAGACCATATGAATTCCTGGCATAGCCAAGAGGGAAGTTAACCTGACAAAAAGAACAGAAACTCTTTGAGAAAGATAAAcgtcatttttttccccactattGTTGTTTATATCTAAATAGGGGAAAGGCCAAATCAGACACCAGACCTGAGCAGTTGACTTGATGGATTACAACAAGCACATTTCTCAAAAGACAACAAGAGTACAGGGCAAAACCAAATTGAGTATGCtaatcttttgtttttgtggttaTTGCTTTTGAATATTGTTTTCCGTTTtactttactttctttttttccttcaattTATGAATAAGTCCATACATATCTATATAccattatatttttgtctttatttgttATTCTGGTTTTATATATGAATCCTTTTAGATGAGTATTTTCTTTAGGAAGAGCTTTCCTGAGAAGATATTCTGAGGAAAAGAAGGGTAATCAGAACTGGCTGGGTCTTCCTTATCAGCTACATATGCTTAGCTGGGGCTTTTTTGGACACTTTGGCTCACTGAGGATGTCAATGATAATCAACCCAGAACACTATTGTTATGTTGCAGTGACTTAATCAGTTTCTGTTATCAGGGAATTGGCATTATTCTATTTTGCTCTCGTTGTAGCCAACTAAAGCTGTCAATGTGGAAAGTAAGTATCTTTGTGCCAAAGTTAGGACAGTCATCTTTGGAGCATGAGTTTGACTACTGGCAGGGACTCCAGCCATGATCcagcactcactcacacatgcactaaCACACCCTCggtctcacaaacacacacacacacaaacacaaacaaacagactcatacacacactccgTTCACTCTACCCTCAGCTGTAGGAGACGTGCCAACCTGGCATCGACAGCCTGCCCAGACAGAGATTTACACTTGACCGTATATGTAGCACTTTTGCGATCCTCTATTCAAGGAAGGCACATCTCGTCCGCTGAGAGTAGAGTTACTGTCTGTGAGCTTATATCTCATCCAGCATGTCCAAACTGATGACAACATCAACATATAGAATACAATCAACCTTAGAGCACTCCCTGATGATGTCAGTAGACAAATGCACACTTTCAGCATGGACAAAAATATCCACACACAGTAGCAACATCATGCTTCAACACAACAATCAAAGACATATGCAAGTCGAAAGCAGGAATCTCTATGGAAAACATTTTGGAATCAGACTCAGGGCTTTTCAGTAAGGACCAAACCCTAGCTGCTGTCAGGCATGCTAGAAACAGGCaatatttatgtgtgtattcTTGACTCCGTTTTGATCAGCTCAACCCCTCTACGTGTACACAGAAGGTGACAAGTCTGAGAAACAGCATGGATGCCAGTCTGACTCTTCCAGAGGGGGACAAATCATCGTCGTCACCAACACTGCCTCGCCTGTGCTCGCGCTGGCATCCTTGCATCACACCGCCTTCTCATCCCAAAAGCCATTATATAATTTTGCCTTCTTGTGTATATCCTCACTTCCCTTTAAAGGAGCTGTGGAGGATTATGTGTTCTCATGTATCATTTCTTTATTGCCAAAATGTCTCAATAGGCGATCAGCTGGGAGAGCGCGGCTGAAATACagtacaaatgtttttttctgtctctctttgaaGCAATATGAACATTCTTTTTCTGTAGCGGTGAGAGGCCCCATTTTCTGAATATGGACAGGTCTCatcagtgtgcatgtgtgtgtgcgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgctttAACATGTTTTGAGTCATTGGGTGAATGTCCTCAGCACGGTGCTGTCACACAAAAACTGTGTGATGACCccatcccttctctctctctgctggctTGTCATGATGTCAGTGATGGTAATGCAGGCAGAACATTGAGATTAGGTCgtttcatgttttcatttttaaacatgGCCAAGGTGTTGTCTATCTTCTGTTTATGTCAACTCTTGTCATACAAAGAAAAGCCATATAAACAGTAAGAGGCACAATAAACTACTTTTGTGAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68928 lncRNA downstream 10964 20862226 ~ 20952782 (-) True G51589
TU68930 lncRNA downstream 10964 20882974 ~ 20952782 (-) False G51589
TU68929 lncRNA downstream 10964 20920695 ~ 20952782 (-) False G51589
TU68915 lncRNA downstream 237845 20725627 ~ 20725901 (-) True G51577
TU68912 lncRNA downstream 240748 20722650 ~ 20722998 (-) True G51574
TU68967 lncRNA upstream 42734 21025133 ~ 21031699 (-) True G51614
TU68973 lncRNA upstream 54683 21037082 ~ 21041944 (-) True G51620
TU68958 lncRNA upstream 63650 21046049 ~ 21048786 (-) True G51606
TU69031 lncRNA upstream 184323 21166722 ~ 21167748 (-) True G51673
TU69042 lncRNA upstream 216941 21199340 ~ 21199849 (-) False esyt1a
XM_039799365.1 mRNA downstream 53329 20906056 ~ 20910417 (-) True hoxc13a
XM_039799367.1 mRNA downstream 64611 20895268 ~ 20899135 (-) True hoxc12a
XM_039799364.1 mRNA downstream 77494 20882028 ~ 20886252 (-) True hoxc11a
XM_039799362.1 mRNA downstream 88465 20862507 ~ 20875281 (-) False LOC120558386
XM_039799370.1 mRNA downstream 99423 20861762 ~ 20864323 (-) True hoxc9a
XM_039800109.1 mRNA upstream 66445 21048844 ~ 21066026 (-) False rbms2b
XM_039800110.1 mRNA upstream 66638 21049037 ~ 21064482 (-) True rbms2b
XM_039801492.1 mRNA upstream 157504 21139903 ~ 21141062 (-) True LOC120559628
XM_039801498.1 mRNA upstream 185505 21167904 ~ 21199043 (-) False fmnl3
XM_039801500.1 mRNA upstream 185536 21167935 ~ 21199043 (-) False fmnl3
XR_005639108.1 other downstream 11228 20883938 ~ 20952518 (-) False LOC120558386
XR_005639338.1 other upstream 185572 21167971 ~ 21199043 (-) True fmnl3
XR_005639356.1 other upstream 991302 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 1240750 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1547207 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 2231699 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile