RNA id: XM_039799496.1


Basic Information

Item Value
RNA id XM_039799496.1
length 2204
RNA type mRNA
GC content 0.38
exon number 4
gene id rab5if
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18613329 ~ 18618762 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTATTGCGCATGCTTAGATGGCCTTTTTTCGGTTAGACGTTGGAAACTGTCAGATCAGCGGAGCGTGTATCCCCTTAATACCTTCTAATATTTCACAGTACTTTCTTCCCCTAGTCTGTCATCAGATTGGAAGTGTCATCAGATCTGGATTATAACTTTTCGACGTCTGTAGTCGAAGGAAACAGCGAAGAATGACGAGCAATTTAAAGCGGAAAGAAGAAAGTCAACTGCAGAATGGTGATGTAAAACAGCCCACATGGAGCAAAGCCTTCAACAGTACCGCTGTTTGGGAGGAGAAGGACGAGTTTTTAGATGTGATTTACTGGATTCGGCAAATTATTGCAGTAATCCTTGGTGTGATATGGGGTGTCGCACCGTTGAAAGGATTCCTGGGAATAGCCATATTCTGCATCATCAATGCTGGGGTCCTGTATGTATACTTCAGCAGCTTTCAGCAGATTGATGAGGAAGAGTATGGTGGCACGTGGGAACTCACCAAAGAAGGCTTCATGACATCCTTTGCTCTGTTTCTGGTGGTGTGGATAATCTTTTACACAGCTCTACATTTTGACTGAGAGGAATCCAGAGGACACTAAATACGAACATTTCTGTTGAAGTAAATTGTCAAGACTGAGGAACTCCATGGCTTGAGGGGTGTCAACACTCCTACATACAGTGTGACGTTTCAGTGTGCAGTGCATCATGGGAATCCTAGTTTGATTAACAAGATCCTGCAATACCACCGTGATGAACATGTTCAAATAATGTACATCTCTCTAATTTGGGGGTTCCTTTTTAAGGCACTCTTCATTACACCTCCCAAATAATTAAATTTCCTTCCTCACTACATCGTCATCATCTCTGACAAAACACTAACGAATAGTTCAGCTGAGATTGGTTGCAGTTCTATTTATGATGGAAGAGTAACTTGATGTAAATCAGCATATGGATTCTTTAGTATTTGTTGGTCTACAGGccctttcttttgttttagaaGAGTGACATGAATGCAGATTTTAGATTGTAAAGATAATATAGTCATCCAAGTTTATTGCTCACTTAAGTAACAGGAAGTGGGTAATAAAAACAAGGTGAGGTCGTATGGTTATGAGGGTTCAATCAGTCCATAAATATGAAGTgttaccttttttaaatttagggACAAAACGCACCATATTGGATGTATACAACTACCAGTAAAGGATTTTTCATGTGTCTTCACTGGTAAATCCCCCCTCTGAAAGTTCTCTCCAACATTGACCTTTTTAAGATAATAATCTGGACAGGGTAAATTTAGCAAAATTAGTAAAATAATTAGTTGAAAGTACCATGGCAGTAAAGCACAGTATAGGATCCCATTTCGGTCATGTGTATGTGGTTTCAATGGTGGGAGTCATCTGTTTTCGAAACATTAAGAGGTGACTCTGAGCttccatgttttttagtttttttgcttACTGGATATAAACAGCCTTTTTGAATAAAATCTGTCAATTGTTATTTCTTCTAAAGGGTCTGGTGTCCAACAATTGTGAAAGGCCACAGCCAACCACAGTTGAAATGTCATTCGTGCTAATTTTAACATCAAAAACAAATGCTGGTTGGTAAGATACACATATCAGCTGATATCCAATCCCGATGACCGTATCTGCCAGCTGTTACTTCAACCAAGAACTAATAACCATCTTTAATTATCTGTCCATCCAAATAATTTCCTCAAAGCAAAGAGGGAGGCAACGTGCATGCCGTTTTCAGATGCAAATGTTCACAGATTTAAGCTAAAAACTGGTCTGTGCACTGCCATGACTTGCTGTTTGTGTATCttgatgtcatttattaatggCATTAGTTAGGAGGGTAGAAATAATGTTAatgtattattttcttttcacatgtAGCTTCCAGATCAAAGTCTTACctgttttaaaattaatttaaacgTGTGTTTATTCTGTACAATGTCCCTTTTGTCAAATCCACCTTGTATTATGCAGATTTATTTGTACTtatgttatatcttgtttgatGTAACATATTTCTCAGTATTTTATAGTGAAGAacttttaaaaacagttctTGCAAAGTTATTGTAATGATACTGTTATATTAGATATGCAGCTGGTGTTTGAAAGGATTGTATTTTCTGATCAAATCTTTTGGGAATCATTAAACATGGGCTTTATTTGGCCTCCATTTTCAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68086 lncRNA downstream 108313 18504469 ~ 18505016 (-) True G50945
TU68082 lncRNA downstream 137617 18474909 ~ 18475712 (-) True G50941
TU68072 lncRNA downstream 244959 18368027 ~ 18368370 (-) True G50932
TU68052 lncRNA downstream 293724 18319313 ~ 18319605 (-) True G50915
TU68049 lncRNA downstream 297476 18315592 ~ 18315853 (-) True G50912
TU68142 lncRNA upstream 15703 18634465 ~ 18635235 (-) True G50991
TU68237 lncRNA upstream 93913 18712675 ~ 18713213 (-) True G51064
TU68241 lncRNA upstream 119721 18738483 ~ 18740343 (-) True G51068
TU68243 lncRNA upstream 139280 18758042 ~ 18758501 (-) True G51069
TU68268 lncRNA upstream 304101 18922863 ~ 18928835 (-) True G51088
XM_039799494.1 mRNA downstream 1729 18603644 ~ 18611600 (-) True dhx35
XM_039799288.1 mRNA downstream 272738 18335401 ~ 18340591 (-) False spata2
XM_039799289.1 mRNA downstream 272872 18335401 ~ 18340457 (-) True spata2
XM_039800761.1 mRNA downstream 423114 18160174 ~ 18190215 (-) False b4galt5
XM_039800760.1 mRNA downstream 423114 18160174 ~ 18190215 (-) True b4galt5
XM_039799500.1 mRNA upstream 17813 18636575 ~ 18668749 (-) False plcg1
XM_039799501.1 mRNA upstream 17813 18636575 ~ 18668749 (-) False plcg1
XM_039799498.1 mRNA upstream 17813 18636575 ~ 18668749 (-) False plcg1
XM_039799499.1 mRNA upstream 17813 18636575 ~ 18668407 (-) True plcg1
XM_039799502.1 mRNA upstream 51912 18670674 ~ 18686422 (-) True top1
XR_005639183.1 other downstream 726996 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 923569 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2329473 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3759512 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 261603 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1081011 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1082568 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1087917 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1702005 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile