RNA id: XM_039799503.1


Basic Information

Item Value
RNA id XM_039799503.1
length 4391
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC120558485
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18700325 ~ 18711876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGAGCTCTTGTGTAGTCGTGGTGACGGAGAGGCTCCTCTCATCGCATCTCACCTGCCATGTTCAAAATCCCCAACATAACACCGTcaaggtttgtttttatttgactgCACGCATTTCCCGACAACGGTGGCAGCCTACATGACTGGAAAAGTGCATCATCATCGGAGCTAACGAACTTAAACACCCGTGTCTTGGCCTATCAAAAATATTCCCTTAAGAAGTAAAAACTGCAGAGATATTGTAGTAAGGGTTGTTATATCATACAAGGAAAAACTACATATGCTTGTTGGGGAGTTGGGATTTACTTGGATATTAATAATCCCATCAAGTACTGTAGATGCAGTAATTCCTTAGCACCACAGCAACAGTGGTCCATAAAGGCATATTACAGGGATTTTTCATCTGGATGACAGTAGCAGGTGTGTGACTAATTATCCCAGACAAGAAACACATGTGACTGGAATATGGATATCCTGCCCTAACTCCCTCACATCCTAAGATAAAGATAGGTTAACTGCAGGATAAACCGTAGTCATGCACAGCCCTGCTCCTGAAATTGTGGCAGGGTACCCAAGTGGATGTGTGGCAGATAAAGATGCCAATCCGGAGACAATCCTGGGGAGTGCCTACTCTCCGGTGGACTACATGAGCATCACCAGCTTCCCCAGGCTGCCAGAGGACGACACACTGTCTGCGGAACACACCCTAAGATTGCGCAAAGAGGATGACAATGTCCTGAGTGAGCAAGATACAGACCCAGATGTGTTTCTGAAGACCGCTCGCCTCCAGCGTCTCCCATCCTCCGCTTCGGACCTGGCTAGCCATGATATTGCATCTCTGCGGGAGACCACCAGAGACCCCTTTACAGAAGACTGTGCCTGTCAGCGAGATGGACTGACAGTCATCATCACAGCTTGTCTCACCTTCGCCACAGGAGTCACTGTAGCTCTCATCATGCAGATCTACTTTGGAGATCCACAGATCTTTAACCAAGGGGCAGTGGTGACAGATGTGGCCCAGTGTACATCTCTTGGCTTTGACATTCTTGAGAAACAGGGCTCCAGCGTTGATGCTGCCATCACTGCTGCCCTTTGTTTGGGAATTGTCCACCCTCACACTTCTGGTATTGGAGGTGGTGGAGTTATGTTGGTGCATGACATCCGTAAGAACGAGACGAGGGTCATTGACTTCAGAGAGACGGCACCATCTGCCATCCACGAGGAGATGCTGCAGACAAACCTTGATCTAAATCCGGGCCTGCTGGTGGGAGTACCAGGCATGCTCAGTGGGATGCATCAGGCACACCAGTTGTATGGCAGAATGCCGTGGAAGGATGTGGTTACCATGGCAGCAGAAGTGGCTCGAAATGGATTTAATGTTACTCATGAACTAGCTGAAGCTCTGGCTAAAGTTAAGGACCAAAACATGTCGGATGCATTTCGGGATTTGTTCCTTCCCAATGGCCAGGCTCCCCTCTCCGGGATTTTTACCAGGCGTCTTGATTTAGCAGCCATCTTGGATGCTGTTGCAGTTAAGGGGATATCGGAGTTCTACAGTGGAAACCTGACGCAGGAAATGGCAGCAGCAGTACAAGCAAGAGGTGGGGTGCTCACAGAGGATGACTTTGGAAACTACAGCACCGTCTTACAGCAGCCAGCAGAGATCATTTATCAAGGACACCACGTGATGGCGGCCCCGGCCCCACATGCAGGTGTTGCCTTGATCACTGCTCTAAACATCCTGGAAGGCTACAACATCACCAGTCAGGTGCCCAGGAACCACACCTTCCACTGGATTGCAGAGGCTGTAAAGATAGCTCTTGCCTTCGCTAGTAGGCTGGGTGACCCCATGTATGAACCTTCTGTCTCAGAGATTGTCACCATGATGCTGAGTAAATCACAGGCTTCCCTACTCCGCCAGATGATCAACGACTCTCAGACCTTCCCTGTCGGCCATTACGCTCAATCATTTACCTTGGAGACGGGTGCAACAGCTTCCCAGGTCGTGGTCATGGGCCCGGACGACCACATCGTGTCAATCATGAGCTCTCTGAACAAACCATTTGGCAGCGGGATCGTGAGTCCTTCAGGAATCCTCTTGAATAGCCAGATCCTGGACTTCTCCTGGCCTAATAAAACACAGGGCTCATCACCTAACCCACTTAACAGCCTCCAGCCTGGGAAGAGGCCCATGTCCTTCCTGATGCCCACAGCAGTGAGGCCTGCCGTGGGGTTATGTGGCACATATGTGGCCGTTGGATCTTCCAATGGAGAGAAAGCTCTCAGTGGCATCACACAGGTGCTGATGAATGTTCTGTCTTCGCGTAAAAATATGAGTGACAGCTTAGCATACGGAAGACTCCACCCGCAGCTGAAGCCCAACATCCTCCTGGTGGACTCTAAGTTTCTAGACGAAGATGTGGAGCTGCTGCAGGCCAAAGGTCACAaggtggagaggagagatgTTCTCTCAATGGTGGAGGGCACCCGGAGAACCAATGACCTCATCATAGGGGTGAAAGACCCCCGTAGCGCTGATGCCTCCGCTCTCACTATGTCCAACATGCCCTAGTGTACCCCCTTGCCCCCTACTTGCACATAATTAAGAAAGGATAAAAGTAACACGGTATGATTGATGGTTAGTGAGGGAGTAAGGAGGCTGCTCAACACTTAATACACTAAACATAAGTTAATGGCAAAGTATGGTtgtttgacagaaaaaaacagtcaacaaaaatacatgcaGCTTTGTCTGAGATGACCTTGTAGGAATCTTGATGTGATGCAATAGATTTTTTTAGCTGACTCACAGAAAACTACAAAGGATCACCATCTCACATACCGATGTTGGTATGCCCTTTTTCTCACAGCCTCAAGTAACGTTCAGTTGCAGTGTAGATAGTGTTCAAAATGTACGTCCATCACTTAATGACATCAGTCGAAGTCTGCAGCCAACCTATATTACGCAGAGCAGTAGATCTGATGCCCGCCAGCTCCACTTAAAGGAAGCAATATACTCAAGAAGTTTAGAGTGGATTTGCTTAGTTAACATTAGAGAAAGGAAGTAGAAAAGTGTAATGGCCTTGGGAAGCTATTTTCACAATGTTGAGTGACAGTTTTTGGCCTGTGATGTACTGATCAGGACATTCGAATGATGAACAAAAGGATTCTTTGCAAGAAAGGGCAGACATGAGAAAAAGCAATGATGCCACACCATTGAGTCACCATTCACAACACGTGCATGGTCCTCCACCTTTCTGCTTTTCAACTCATCCACTGCATTTCACCATCATTTGAAATAACGCATACGATCATGTGAAATGGTGAAGGTAATAATATTTAAACCACAGATTAAGCCATACATTGTCACACCTAAACTAGAAAATGACAACCCTGCTCTTTGTATGGTGTGTGTAACTGTGGTGTTGTTTGGTACAGCTGCTGGAGTTGTAACTGTTAAGAACAATCAATGGCTCTTTGGGACCGTGTTCAGACTAACGCATTATTAACACAAGATACGTCATTCAGAACTATCCATTGATTTCCTTATACAAGAGGATTTGCTTCAGTTTCACAGGTGTTAAATATTGCTAATTATAGAATACGTGTATTTAAAGATATAATTTATGAAATTTTAGTTGTCGCATGATTTTGTTCTCATTTAAGATTTTTATTTAGTAAGAATGggaataatataattatttacaGATGGATTGAATGTAATCTGTCTATTTTTATATGAATATTTGTTGGGCTGTATACATTATTTCTACTGTTGTAACTCAATGCCTTCAATCAGCTCATTTTAGAAAAGGCTGTTGTAAGggtgtttatttttgtgtacTTGTGTAATTATTTTAGGTAGCATATTTGAAGTAAGAACAAACAGCTTTTCTAAAGCGTTGCATTCTAAAAGTGGTTCAATTTGAATGCAGAATGGCACATGCTGACTGATCAAACGAGCCCTTAACCTTattgtctttgttgttgttgggcaCTAGTGCAATTTGACTGTTGATGCTTGTTTCCTGTACTGTAGAATAACATGCATTCAGGCACGCATTTGCACAAAACCTGAACCTGTTTGATTTCGTCCATGTGCATTGGTATCAgattttaattaaaatcagcattgTCCAAATccaagaaataaaatgtttgcacACATCCTAACGTTGAACACTGGGCTTTTAAAATTGTGCAGATATTTGTTTGTACACTTTTTATACATACAAATGTATATGTACATAGTAGTCAAATTTTTGTTTACCTTGTTTTAAGccgtctgtttttgtgtgtactttgagagcaacaaAAAGGCAATCAAATTCCCTGTACGTGTGAACATTTAccattaaagctgattctgatatgGATCCAACTAAAA

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68142 lncRNA downstream 65090 18634465 ~ 18635235 (-) True G50991
TU68086 lncRNA downstream 195309 18504469 ~ 18505016 (-) True G50945
TU68082 lncRNA downstream 224613 18474909 ~ 18475712 (-) True G50941
TU68072 lncRNA downstream 331955 18368027 ~ 18368370 (-) True G50932
TU68052 lncRNA downstream 380720 18319313 ~ 18319605 (-) True G50915
TU68237 lncRNA upstream 799 18712675 ~ 18713213 (-) True G51064
TU68241 lncRNA upstream 26607 18738483 ~ 18740343 (-) True G51068
TU68243 lncRNA upstream 46166 18758042 ~ 18758501 (-) True G51069
TU68268 lncRNA upstream 210987 18922863 ~ 18928835 (-) True G51088
TU68282 lncRNA upstream 236957 18948833 ~ 18950436 (-) False kcnd3
XM_039799508.1 mRNA downstream 314 18686773 ~ 18700011 (-) True ncoa6
XM_039799502.1 mRNA downstream 13903 18670674 ~ 18686422 (-) True top1
XM_039799500.1 mRNA downstream 31576 18636575 ~ 18668749 (-) False plcg1
XM_039799506.1 mRNA upstream 1750 18713626 ~ 18723209 (-) False LOC120558486
XM_039799505.1 mRNA upstream 1750 18713626 ~ 18723209 (-) True LOC120558486
XM_039799507.1 mRNA upstream 1750 18713626 ~ 18723207 (-) False LOC120558486
XM_039800724.1 mRNA upstream 63874 18775750 ~ 18787283 (-) True samhd1
XM_039801584.1 mRNA upstream 90071 18801947 ~ 18817830 (-) True LOC120559673
XR_005639183.1 other downstream 813992 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1010565 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2416469 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3846508 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 168489 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 987897 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 989454 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 994803 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1608891 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile