RNA id: XM_039799522.1


Basic Information

Item Value
RNA id XM_039799522.1
length 3885
RNA type mRNA
GC content 0.47
exon number 13
gene id ccdc187
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12896793 ~ 12915083 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTATCACCATGAGGCTGTGACACAACCGGGACAATGATGGCAGAGCTGGAAATTGACCAGTCCAACCTTCCACGTGTCCGAGAAGCCACACAGATGGTCACAGCTATACCAAAGACTGTAGGCCCGATGTCACTCTTACAATGAATCTTGAGGCCTTCCATTTATTCTCATCATCTATGGCACCATCCAGCGAATCTTAGGCATGTGCGAGTGTTTTGCTGTGCTGGAGGATGGAGTGTTGGCACACAACCTGCAGGAACAGGAGATCGAGCAATACTATACCACCAACATCCAGAAGAACCAGCTAGTGCAGAATGACATCCGTGTAGCGAAAAGGCTgcaggatgaggaggaagaggagcaggccCAGCAGAGCACCCTCCTCAGACAGGCCTCCAGACAACTAGAGGAGGAAGACTTTGAATATGCCCGTGTAATTCAGGAGGAGATCCAGCGTTGTGCCGAGGAGGCCCGGAGGAGGGAGCAGGAAGATGAGGAAATAGCTAAACGAAtgcaggaagaggaggagcagagaaTCATGAGGAGGAGCCATAGTGAAGGCAGCGCCAGGGAGCCTGCCCTGCCATCCCCACTCAGCAGCAGCCTTCACCAACGAGAGAAGCAGTACCCTTCTACCACCACCAGGTGGCAATGGCCTACTTCTCACAACCATTCAGACTTAACAAGGCCTCAGGCTGACTCCCCCAGGGGGGTAGCAGCTCAGAGAAACACAAGTGCATGGTCAAATCAAGGACACACAGATTCCATAAGGGAAATCAGGAGTGAATTGGGAGAGCGTTTGAGTGAGGATTCAGAGGACTCGGACACGGTTTTCTCTGAACAGCTCTCTATCAGGTCCCAGAGACTGAATGAAAGGCTCAACACAGCACCTCCTCGGCGCCAGGCATCTTTACATCAGCCGCAAGAGAGAAACTACACAGGTGTTAGCTCTCGCAGCAGCTttacagaggagagaggagagtggAATGAGGACTTTTATGAAAATGGGGACTTAGAGAGGAGGAAGCCTAGGAATTGGGATCAGGAAAGGAACCATGGAGAGGAGTATCAGGGTTTGCACAGGAACAGAGATCAGGATAGAGACCGGAGGTTAGTTGAAGTAAGAGAAAGGCGATGTAGTCGTAGTGAATCTGTCAGGCTACCTGACAGGAGTAAACACAGCAACAGAGACTTGGCGCGGACCTGGAGCTATAAGGACAACCCCGACAAGCATGTCCATTTTCAGGACCACACCAGGAGCTCTAACAGGCAACAGGGGGAAACCACACGAGTCTGGGAGATGCTGGGCCAGGTCCTCAGAGAGAGGGGCGTGCCTGTGAGGTTTGGCGTCAACGGGGCACCACTACAAATAAGGCCTCAAAGCAGAGACAGCCAGGTGCTTCATGGGAGTGAGGTCTCCTGCAGCGACTCCCAACCACATCAGAGGGTCTTCCAGAGAGCTGCCACCACCAGGCACAGTTTCCATGGAGACatcagggagaggaggagactgtCATACCAAGAGAACAGTAGGAGAGATCACAGAGAAGACGGAGACGGGCACCGTAATAATGTGGAGCGTGATGGCAAGGTTGATGAGATGAATAGAGACCTGTATCTTGCTAACAGAGACGGGGGAGGCAGTAGAAGGTGGAGAGGGCACAGGTACACTAACGATGACGAGAGGGAGAGGAATGCGAATCATTGCAGGGTCAAGAGGACAACAAGAGAACGCAGGCATTGGCACCAGAAGAACATAGAAGAAAGGTTAAGctcagaggaggagcaggaggcggAGAGGAGAGTAGAGCTGCCCCATCGAAAAGCCCCACAGCGTAGCCAAAGCCTCAGCAGCAGAAGCCGCAGGGCTTCAACCAGGGATAGGTCAAGGcgcctggcagcagGAGCGTCACTGCAACCAGAGCCAGGCGAGACAAGCCTGGACCTGGGGGAGCTGCGGCAGGTCCTGCAGGATGAGGAACTGGCTCACAAGctgcaggaggaagaggaaaagctGTTGAGGAGGAACTCTCGGCCCTCGCCATGCAGTTCTTACCCAGAGGGAGACTTCAGAGTAGCACAAGTGGCGCAGGATGAGGAAATTGCACGCTTTATGCAGAAGCAGGAAATTAAGTCAAAGCGAAGATCTCGTGAGCTAGAAGGGCCGGCATCGTGGCGCGAGCACAGAGCGATGATCAGTCATCATGACCGACGGGCTGCAGGAGACCAACCGGTCCAACGAGAGAGGCTTGACTCAGAGGGACTTCCTTCCCCCACTGAGGAGTGCTCCCCAGAGAACCAGCCACCCAGCCCATTCTCCACTATGCCACAAGCCCAGCAGATCAGAAACATTGCGGAGGAGCTGGACCCGACCTTCCAGGCCAGAAGGGAAAGCACAGAGGGCCTCCGAGTGGGACAAGCAGgTCCAGCCTGTGAGACCCTTCCCATGCCACATTCTGGCTTGCATGACTTACTCGAGGAGCCTACTTTCATCCCACCCACAAAACGGCAAATGGACAAATCAGGACGCACTAAACTCAAAGAGAAGAAGGAAAATTGCAAGCAACAATAATTTTCCACACATTGTGCTGTTGGAGTGCATCACatctatatattttataacaCTAAATATAAGTTCAGCTACAGAGCTCTTATTAGTTTAAGATTACAAGAATATAGTTCTCTCTACCAGCCACCCCTACTAGCACTTTAGACCAGTGGAACAGAGTGAATTGAGAGAAGTGACATTTTATATTTCTTCATGAAGTGAATAATGACAACACTTTGGACTCAtgcctttttataattttcaaaGGGAAGTTGTTGAAATCTTCACtgttaattatatttttattatatttgaaactttttatgtttgtttttatttagttgATGTGTCAAGAGTCCATCCATTATCTATAATCGCTTCATGTTATttcatttgacattttggatgCTCTTTGGTGGAGGCACGGTGgtgcagtggttagcactgATGCCCCACAGCATTAAGGGAAGTAAAACCAAAGCTGTAGGGTGGGGGCaatcaaaaatgtcaaatgacaaaacaaaaagttaTTTTGATTACCTTTTAACCCTGACGTGGTTTTAGGACAAGCTACTTTAAGACATCCACTTTCAGAGTGGCTATCAACTTAGTTTCAAAGCAGTTTGGCAGGGCTCCAGCAATGTTTACAATGGTACAATGACAATCACATTAACTTGTTTTAACCTTATTAAATGGAAATCCCATTTGAAAAAACATATTGCAACAATCCTCAACGTATGTTCAATTGTTTGAGTGTCATATCCAGATATTAATAAACCTCTGGGAGCAGTATATGTAACAAACTAATCTAAGATCAAAGATCCACTTACAGTACTAGCTTTTTGGAGGTTTCAACTGCATCTCAGTCATTTTAGGTCTCCCCCTATATACAACAACTTATCACATGACTACATTCCCATACATGGGTCACATGACGACACCTGAACCATCCCCATTCGCTGACTGAAGACCGATGCAGTTGAAAAAGCTTCAATAAACTTGTAAGTGGACCTTTTTAAACTTACATTACTTGATCCATACCCAACTgatgtttatgtattttttgcCAGGTGGGCTTTTATCAATCAGTACCATTATCCATTTTACAGAATACTAAAAAAAACCTTATTTTTACGCACATATAACCAGTTATTGGTCTCActtgttgtctttgtttttttttttttttttatgttcctaTTACTCCCACATTTTAAACCTCCTTTTGTTGTTtcgtttgttttttacagatgAAATATGCCACTGCAGGTGGACCACTATGAATGCAATTGTTCTGTATGAAagtacaacaaataaaatataatcacattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65931 lncRNA downstream 57661 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 117473 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 125374 12768820 ~ 12771419 (-) True G49372
TU65826 lncRNA downstream 192688 12700429 ~ 12704105 (-) True G49307
XR_005639121.1 lncRNA downstream 235551 12660452 ~ 12661242 (-) False LOC120558434
TU65959 lncRNA upstream 6736 12921001 ~ 12924328 (-) True G49407
TU65973 lncRNA upstream 292102 13206367 ~ 13221242 (-) False camta1a
TU66015 lncRNA upstream 367722 13281987 ~ 13284250 (-) True G49447
TU66052 lncRNA upstream 394252 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 394252 13308517 ~ 13312729 (-) False LOC120558437
XM_039801819.1 mRNA downstream 152471 12740741 ~ 12744322 (-) True apex2
XM_039801822.1 mRNA downstream 156969 12729392 ~ 12739824 (-) False LOC120559801
XM_039801821.1 mRNA downstream 158206 12729392 ~ 12738587 (-) True LOC120559801
XM_039801824.1 mRNA downstream 160820 12729392 ~ 12735973 (-) False LOC120559801
XM_039801820.1 mRNA downstream 168024 12722054 ~ 12728769 (-) True wasb
XM_039799528.1 mRNA upstream 10193 12924458 ~ 13221338 (-) True camta1a
XM_039799633.1 mRNA upstream 321951 13236216 ~ 13237110 (-) True dhfr
XM_039799631.1 mRNA upstream 328909 13243174 ~ 13249562 (-) True LOC120558584
XM_039799629.1 mRNA upstream 330498 13244763 ~ 13249562 (-) False LOC120558584
XM_039799630.1 mRNA upstream 330498 13244763 ~ 13249559 (-) False LOC120558584
TU65695 other downstream 458068 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 505122 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 673791 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 727584 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 768368 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 338147 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1226115 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1617859 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1931073 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1931073 14845338 ~ 14853817 (-) False G49845

Expression Profile