RNA id: XM_039799550.1


Basic Information

Item Value
RNA id XM_039799550.1
length 2631
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC120558517
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11337607 ~ 11348247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACCCTAACAAACCAACAATTTAAGCGATTCAACTGTCCCAGCAAGGCTGTACGTGCTAAAGCCTTTTAGTTTCTAGGCTCCACCCACAAGGTGTAGAGGGTCTTTAGCATAGCTTGATAAGGAATCAAACAAGTGggcaatacacacatacacctgaGCCACATGCCTGCAGACGTTGCACTTCAACAATAAGCCATGCACCGGGATCGCCCACGTTATGTGATTGACAGGCCGGCATATAACCTCACAGACTTTGACAGAGAGTTTGACAAGAAGAGTCGACAATTCCCCGTTGGAGAGAAAGTGAAGAAACTCTTCAGATGCTCTGTGCTGAGACTCAAGGGCTTGTTATTCAGACATCTGCCTGTACTGAGCTGGCTGCCCAAGTACAAAGTGAAAGACAACCTGCTTTGTGATGTCATCAGCGGGGTCAGCGCCGGCACCATTCAAGTTCCCCAGGGCATGGCATTTGCCCTCCTGGCAAGCCTCCCTCCTGTCAATGGTCTCTactcctctttcttccctctcatCCCGTATTTCTTCATGGGCACTGCTCACCAGATGGTCCCAGGTACGTTTGCTGTCCTCAGCATTATGGTGGGAATCGTATGTCTTAGGCTGGCGCCAGAGTCAGACTTCAGTCATTTCAATGCCACACTTAATTCTACAATAGTGGACACAGACCGGATGAATGAGGTTCGTCTGGGAATATCTGGAACCCTGGCCTGTCTCACTGCGATCATACAGATTGGCCTTGGCTTCATGCAGTTTGGGTTTGTAGCCATCTATCTGTCGGAGTCCTTCGTCAGGGGCTTCATGACTGCTGCAGGACTGCAGATCCTCATCTCAGTGCTCAAGTACATCTTTGGCATCCAAGTGCCACCTTATAGTGGTCCGCTGGCCGTTATATATACTCTGGTAGATATTATATGTGGCCTCCCTGATACCAACATAGCGTCGTTGGTATTTGCTCTGGTCAGCAGCATAGTTCTGATTGTAGCGAAGGAGCTGAGTGCACGCTACCGCCACAAGCTGCCCTTTCCCATTCCTATGGAGATCATAATTGTGGTGGTGGCCACAGCCATCTCAGGCCCTCTGCATCTTCCTGAGATCTACCACATGGACATAGTGGGAGAAATTCCTTTGGGATTCCCAGCCCCCATCCTGCCAACAGTGAATCAGTGGGAAGACATGTTGAGCACAGCTTTCTCCCTGGCAATCGTGGGGTATGTCATTAACCTGGCAATGGGCAGGACACTGGCAGCCAAGCATGGCTACGACGTGGATCCCAATCAGGAAATGTTGGCTCTTGGCTGCAGCAATTTCCTCGGGTCCTTCTTTAAGATCCATGTGATCTGCTGTGCCCTGTCGGTGACCCTGGCGGTGGACAATGCTGGTGGAACATCACAGTTTGCCAGTCTATGTGTGATGCTGGTTGTTATGGTTACCATGCTGGCATTGGGAGCCTTCCTGAAACCACTTCCAAAATCTGTGCTTGGAGCCTTGATTGCAGTCAACCTGAAGAACACGCTCCTACAGCTCTCTGATCCCTATTACTTATGGAAGAAGAGCAAATTGGACTGTtgtgtgtgggttgtgtcaTTCTTGGCCACATTCTTTCTCAGCTTGCCTTATGGAGTTGCTATCGGAGTGGGCTTTTCCATCCTGGTAGTGATCTTCAAGACACAGTTTCGCAATGGTTCGGCAATGGTTCAAATTATGGATACAGATATCTACAAAAATCCAAAGGTGTACAGTAAGGTCGTGTCAATAACAGGTGTGAAAATAGTGAACTATTGCTCACCACTCTATTTTGCAAACGCTGAAATATTTCGCCAGAGAGTCATCAAAAAGACCGGGCTGGACCCTGGTAAACTTATCCTGGCCAGACGGAAGTTCttagagaaagaacagaaacaaaaaacgaaAGAAGAGAACAAGGAGAATGAGACAAGGAGGAGGAAACCCAGCTCTTTGGCAAACATGAAGACCATATCTCAGCTTGAACTGCAAATAGACTTTGAGATGAACGATGGCAGTGCCAGCAAACCTGAACCTCCCACCAGCTATGTCAACTTCCACTGTAGTGACATTGAGCCGGGCGAGCAGGCACCTGACCAAGAGCCACCCAGCCCCACACTGGTGTCCCAGCCCATGCCCTTCCACACCCTCATCCTCGACTTGGCAGGGGTCTGCTTCATAGACCTAATGGGCATCAAAGTATTGATAAAGATGAACTCAAGCTACACAATGCTGGGCATTAAGTTGTACCTGGCTAATGTTCAAGCCCCGGTGTATGAAGAACTGGAGGTTGGAGGAGCTTTTGATGACGGCAATATTGCCCGCAGtaatctctttctttctgtccacGATGCCATTGTGTTTGCTCAGCAGACCACTGGAGAGAGGCGAGTCTCCCCAACGGCAGAGAGAGCAAGACAGGAACTTGCCTTTAACATTAATGAGAAGAAGGATCTGGAGCAGGAAATGTTTTGAGCACTGATCGCTGCAGTGAAGACAAGCGGGAGAAACATGACGAAGATACTAACCGTAAACTTTCAATGTCACTGTAATTTATGGAAATGTATTGTTGCCAAAAATACTTTCTGTGCTTGATCTCATATCTCT

Function

GO: NA

KEGG:

id description
K14706 SLC26A9; solute carrier family 26 (sulfate anion transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65116 lncRNA downstream 116128 11220997 ~ 11221479 (-) True G48761
TU65111 lncRNA downstream 128990 11208394 ~ 11208617 (-) True G48756
TU65104 lncRNA downstream 188225 11149074 ~ 11149382 (-) True G48749
XR_005639118.1 lncRNA downstream 472562 10834886 ~ 10865045 (-) False LOC120558410
TU65055 lncRNA downstream 476920 10834888 ~ 10860687 (-) False LOC120558410
TU65282 lncRNA upstream 90025 11438272 ~ 11438701 (-) True G48891
TU65275 lncRNA upstream 155580 11503827 ~ 11508308 (-) True LOC120558961
TU65296 lncRNA upstream 215824 11564071 ~ 11572989 (-) True G48903
TU65276 lncRNA upstream 228292 11576539 ~ 11578988 (-) True G48886
TU65301 lncRNA upstream 252045 11600292 ~ 11600508 (-) True G48907
XM_039800090.1 mRNA downstream 208297 10968009 ~ 11129310 (-) False plxna2
XM_039800089.1 mRNA downstream 208497 10931388 ~ 11129110 (-) False plxna2
XM_039800088.1 mRNA downstream 209741 10909818 ~ 11127866 (-) True plxna2
XM_039801697.1 mRNA downstream 430681 10867858 ~ 10906926 (-) False si:dkey-261h17.1
XM_039801699.1 mRNA downstream 430681 10867858 ~ 10906926 (-) True si:dkey-261h17.1
XM_039799552.1 mRNA upstream 39 11348286 ~ 11360195 (-) False slc48a1a
XM_039799551.1 mRNA upstream 39 11348286 ~ 11351198 (-) True slc48a1a
XM_039799536.1 mRNA upstream 33935 11382182 ~ 11421461 (-) True itga5
XM_039800856.1 mRNA upstream 107496 11455743 ~ 11464126 (-) True csrnp2
XM_039800857.1 mRNA upstream 116251 11464498 ~ 11477916 (-) True tfcp2
TU65038 other downstream 682789 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1311782 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1613473 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1639500 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3231412 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 540694 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 778639 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 778639 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 801547 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 872490 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile