RNA id: XM_039799584.1


Basic Information

Item Value
RNA id XM_039799584.1
length 6273
RNA type mRNA
GC content 0.49
exon number 12
gene id dlgap4a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14435245 ~ 14517114 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tCAAAAAACACACGCGCATGTTGCCTCTCTCTGCGCAGAATGATTCATCAACCACCGTTTGCTCACGAGACATTAATTTCGGGTCCGACTAGTTCATTTTCGGAGCTGAGTGTTTTGTCGTGGGCCCTCAGATGCCCCCACCCCCACCTGTCTCATCCCGCGTCTCGACGGAGCAaacgctgctgctgcagcattACCGGCAGCCTCCAAACTGCGTTTCCCCTGCCGTGATGGATCCCTCTGTAAACCGGTGAGCTGCTATCAAAAGACCGGCTGAACTGTGGGGAAGGGCGGACAAGCAGTGACCGCGGCGAAAATGTGTCATACATCTaagggataaaaaaaagaagaaaaaaagagagagagacatatttCTATCAATGTTATAGGGACCGTCTTGTTTACCTTCCCGACAGATAAACAGCCGGGTGACAGTGATATTACGGCCGACATGTAAGAGCTGGATAACTATTGCTGTGTGACCGACACCCATCTGCAGCTGATCACAATACAATGAAAAAGGATGAGCCCTGATGAGGTCAGTAGATCCGTACTGATTGGAGACATGTTTTAAGGACGACATCTAAGCCACCATGAAAGGGTTAGGAGCCAACCGCAGTCGTCACCTGTCCGACTCTTGTGAACCAGCAGGTTGCCCCCAGAAGCCTCTCTATCCTTTGACCTCTGACCCTCACAGCTCCTTTCTGTTGAGCCCCACCATAAATCACTATGGCACCTTGGACCCCCATCTCCACCAGTGCCCTCCCACCATCCCCACCCCCATGACCCCTGACTGCCTGCTGCCTTTCAGCCAGATGTCCAACAGCAGCACCTTCCCTCGTCTGCACTTCACCACCCAGACTGCCCAGGTTGACTGCTCCCAGGCCTGTATGGCTGGGGGTGGTGGAGTTGGGCAGGGCAGCAGAGCAGGTACACTGTCCACATCCTTGTCTATGGGCATGGGCTTGGGTCTGGGCCTTACTGGTGCTCCTATGATCACCAGTGGATCAGCCACCATCTCCACTGCAGCAGCAGCCAAGATGAATCGGTTACCCTCCAACATTTTGGATCAGTTAGAGAGGCACCTGCCCTTACAGCATGATGGCTTCAGTACGCTGCAGTTTCATAGAGGACGGATGTCGAAGCAACGCAGTGAAAGCCCAGGACGCATACGTCACCTGATGCACTCTGTGCAGAAGCTATTTGCCAAGTCCCAGTCCCTGGAAAACTCTGCAATCAAAGGCAACATAAACGGCCGTTCTGCTGGAGGAATGACTGGCACCACGGGAGCTGGTGAGGAGGGTGGTAGACCAACACGCAGAAGCAAGAGTAAAGACAGGGCTAAAACTGAGGGGCCAAAGCAGAGACCTAGGCCTAATGCACTAGGCCTCTGGAGCTCAGACGATGCCCTGGACACTGACACAACCAAAGCTGGCACTATTGCTGTAGGTTATCGCAACCCACTGACCATGATGACTCTTGGCAGAGCGGTGTCAGACAGCCAGGCCCCTCCCAGACATATCCCACAGGGCTACCACACCATTTCTGCACATACTCTCAAGACCTCCAAAAGCAGCAGTGACCTCAAGTTTCTGGCATGCCAGGCGACACAGGTAGGAttgaaggaagaggagggaagaaCCAGGCGAAGCAAGGATGATATACTGGTGAAGAGGGGCTCCTGGTCCACTCTCACCCTCAGCCAGGCCAGGCAAGTGTTGCAGAAGGGCTCTGCTACTGTTAACAGGACCCTGCTTAAATCAAAGTCATGCCACCAAGACCTGGCACAACAGTTCCTTCAGGTAGGAGGGCCAGTCCCACTGGGGGACTGGACAGGAACTCTGGGTCGAGGCCGGGCCAGAGGAACTGAGATCCCCTGTCGAAGGATGCGCAGTGGCAGCTATGTGAAAGCTATGGGAGACTTAGAAGACAGTGAGGACTCAGAAGGAAGTCCCAAACCTTCCCCCAAAGCCACAGCACGTCGCCAGAGCTACCTGAAGGCCACCCAGCACTCGCTGAGTGAGCAGCAGCCACCTCTCCCACAACGCAACTCCCTGCCTTCCCTGAAAGAGCTTTCGACTAATCGGAGCCTCGATAACTTAGACTGCTTGGTGAGCCCGTTGGAGGCCCCTCCACGCTACAGAAACAATGATTTCAGCCATTGCTCCGGCACACTGGGCAGAGGCTCGGGCACTCAGCGTGTGAGTCTGCACACGTTCTTACAGGTATACGGGCAGGGCTGTGGGCACTCAGTACCGTACTGTGAGGGGGAATCACAGGCAGTGGAGGCTCTGGATCTGCCTGCACCCACGTGCTTCCGGTCGCGCAGCCACAGCTACCTGCGGGCCATTCAGGCGGGCTGCTCCCAGGATGAAGATACGGCCTCTGTGGACTCAGACTCACCACCATTCATCACTACAGGCTACAGCTCCAACACCACAGTCAGCAATAGGAAGGCTCCTCCTCCTGTCCCACCCCGCACCATATCCAAGCCCCTCATCTCAGTGACGCTGCAGAGCAGCACAGAGTCAGCCCAAGACATATACCTTGACCAGCAGGACCGCGGCAGTGAGGCCAACAGCCAGTCAGGACGCAGCAACTCCTCTGACAGTCTCTGTAGCATCCGCACGGGCAGTCTGGCTAAGGGGGCCCGACCTCCACCAGTCCCTGTTCCTGCTGCAACCCCTGCACCCGCTGCAGGCTCTGTACATCCTGTTCCAGCCCCTCGTGACCTTcctcccaccaccaccaccaccaccaccgttGCCACTACCAGCACTTCCACATCTACCCAGTCCCAAAATGACACCCTGAGCTTTGGTTTCACCCTAGAGCAGCCCCCCACAGCAACCAAGAGGAAACTGTCCTCTATTGGAATTCAGGTGGATTGCATTTTGCCAGTCTTAAAAGAAGAACCTCTACCCCTGACTGCACCCCTTAAATTTCAGTCAATTGGAGTTCAAGTGGAGAACGGCAGGCCATGGTACTGCACCATCAGCTGCCATAATGTCCTTCTCAGCCGGGATAGCAGCATGGCCTCCAGACAGAATACAGAGACTCAGGAGTCCCAGGATGCCGCACCCACAGAAAACGACACAGCCAACTGCGCCAACAGTCAAACAGGGAATGCCACCGCACCTTGCAGACAGGACAAAGCCATGGAACAGCAGCCCCTTAAACACACCTCAGCCCCATCCAGGATATCCACCTCGCCCCCGGAGACTCTGGACCCAGCTTTGGACCCCTCCTCACTTCCACCGCCAGATCCCAGCCTGGAGACCGGAAACTACAGCATGCAAGGGGATGCTGTTCAGCCCGGTACACCAGCTTGCCTCCGAGACGGTAACTGGTTTCTGAAGCTGCTGCAGGCAGAAACGGGGCGCATGGAGGGCTGGTGTCAGCAGATGGAGCAGGAGACCAAAGACAACAATCTGTCAGAGGAGGTGTTGGGGACGATCCGCAGTGCAGTAGGCAGCGCTCAGCTCCTCATGACAAAGAAGTTCGAGCAGTTCAGAGGGCTCTGTAATGAGAACTTGAACGTAAATGCCAACCCACGACCAACAGCGCAGGACCTCGCAGGGTTCTGGGATCTGCTACAACTCTCAATAGAAGACATCAGCATGAAGTTTGATGAGCTCTTCCAACTGAAGGCTAACAACTGGCAACTTCCTGAGAAATCAGAGAAGAAGGATGAAAACAAGCAGCTTCCATCATCTGTGCCAAAGAAGCAGACTAAGCCCAAGCTGTCGGCGGGGAAGGACAGGAGCGTGGACTCGGCTGGAGACAAACAGCGGCAAGAAGCCAGGAAGCGTTTGATGGCAGCAAAGCGCGCGGCTTCAGTACGACAGAACTCCGCCACGGAAAGCGCCGATAGCATCGAAATCTACGTCCCCGAGGCCCAGACCCGCCTCTGAGAGTGAACCAGCACAGATCATCGAGGAAAATCCGGACTCCGTTCAGACATTcattgacacaaacacacagacagatctGAGACGAACACACAGACGTACAACAGATGCACAGAGGCCGATCCCTCATAGCAACACAGCTGATGGCAGGAGAAACGCAGGGATCACAGGGCAACGAAACCATCCAGAATAATGCAGATTATCACCCTGCTGCCATGGGACAGAAATAACCTTGACATATGTttaatattattgttattattgacattataataattattatctccTAAAGTATATTCAGGACTGTCTTAAATGTGCAAGTATCTTGGATAAGGACATCCTGTACCTTGTGAGCTGAAGAATCTTGGTATCCCAGAAGTTTTCTCTCTTAAACCTCCCTTCACTGCTGAGTCTACCAGAAAGTTGTGGCTGCCTGGTTTACGAGCTGAACcaccatccacacacacacacacacacgcacacacacacacattcacacacacactcaggacaCACATGCAGGTGAACTCACTGTCCACAGAGTCTTCCTCTACTCTATTTGTATTAGGCTGCCACTCGTTTGGTGTGGTGTGTACGCTTTACTGTGTACAAATTATAAGATGGTGTTAATCTTCTAAGAGGTTTAAAAATGCAGAGAACCAGAGGAAGGCAGTagcatatatattataaatatcaCACTATTacaatgttcattttgtaaatgttgTATACCAGATTATTTGTTAGAAAGAGGTCAGTGTTCAGTACCAAGgtagttttttttatagatCGAGTACATGTACTATCATGATATATTAGCACTTGATGCAATCATTCAcgccacctctctctcttcctgtcctTTTCACAAACGCGCACTACacagtctgtgtctgtgaatACCCATGTTTAAAGtcttacatttgttttgtttttgtgaaggGATGTGAGGAATGACTGTCCTGCCAGTGAGCTACCGAGGAATGTATGAAATTGTATGCATTTACAGCTCATGTTGACTTGATCACTGCACTTTCCATTCACCTCAGATCAAGTTTGCTCACCTTCGTTTGCCTAATCATTCTGACTTTCACTGCATCCTCATGCGATGCAGGGGACCAAGACATTCACCACTTGATATGGCATTCCCATTCAACAAGACTACGTGTGATAGGGTCAGGGTTTACTTGCCACCGGGAAGGATATGGAATAGCATAGCAATAATAAAGCGTATTAGAGCGAGCAATGCAGTAGGTACCCagtcttaaattatttaattcagCATTTCCAATATGACTTTCTTAGCATGAAGgatgaatgtttttgttttttttcttttatgaaCTGACTGCCCTTGAAATGACTAAAATCTCAGGTTGAACACAAACTCAACAGTAAAAACCACTATGGCTGGATTATTTATTATGTAACCACAAATTAACTGGCTGAATGCTTCAGAGCAAATGACCAATATTTGAAATCCAGGCCTACTCGGTGTTCTTCAGTAATAAAAATAAGGTTTGGTGCAGTGAAGTACAGGCTTAATTTGGCTGCTTAAATCGGCGGTCTCCTTCGCTATCCTTTCTAGCAGCTTGAACCCCCACCCGTTTGTTGATAATGAACTGTGGTacatcttttttaatttaaaattttaatgtAATTTGACACGTTTTGTGACTTTCACCTGAAATGAGGTCGACCTAACCCTGTCTCGACTTCTGTACTTTTAATAATCAATGGTGCTGCGAGGGACTTCATATTGTGCCAAGAAGACGGCAATGATCAACATTTTGGTGTCATTGGCTAAAGCTTTTATGCgaagtgattttattttaatttttttttttttatttatttaatctgCTCATGAATTCTGAAGTCTTTGTGCACATTCTCAGccaagtttgtttgtgtttccatCTGCTCACTCCAGATATGCTATGCCTTGTCTCTGACTCAACTCATGACACTTTGAGTATGGGACTGGAATATTTTCCACATTTCAGTTTTCTCAGATGGAAATACAAGTGCCAAAGGGTACATGAGTGGAACTGGGCATAGCAGATACCCATGCACAAGTGTAAGTTGACTCactagtttttcttttttagtaaGAGCTGGCTCTCCCCCTACTGGTCAGTCTTTGCGTGACACTCCAGACATCTTGTTCTGCTCCattttgaatcttttttttttttttttttttttttccgcaaACATCACACGAGAAATGACGTTGAACTGGGAATGCTGACACAACACCAAGTTGTTGATTTTCTTATTCTCTTGTTTGTATTACATCAACAATGGACATGTGCATTTCATTGTCCAAAGAAATCATTAAACATCCCTTTGCTACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66447 lncRNA downstream 9630 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 31458 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 32615 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 214627 14220217 ~ 14220618 (-) True G49682
TU66377 lncRNA downstream 215465 14219510 ~ 14219780 (-) True G49681
TU66514 lncRNA upstream 22716 14539830 ~ 14544632 (-) False map3k12
TU66554 lncRNA upstream 152339 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 156514 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 165596 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 328224 14845338 ~ 14853817 (-) True G49845
XM_039799588.1 mRNA downstream 2251 14416336 ~ 14432994 (-) False LOC120558545
XM_039799587.1 mRNA downstream 2251 14416336 ~ 14432994 (-) False LOC120558545
XM_039799586.1 mRNA downstream 2251 14416336 ~ 14432994 (-) False LOC120558545
XM_039801022.1 mRNA downstream 25840 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039800933.1 mRNA downstream 204839 14228370 ~ 14230406 (-) True taf11
XM_039800136.1 mRNA upstream 22674 14539788 ~ 14551558 (-) False map3k12
XM_039800135.1 mRNA upstream 22674 14539788 ~ 14551558 (-) True map3k12
XM_039801487.1 mRNA upstream 48703 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA upstream 48703 14565817 ~ 14590837 (-) False col2a1a
XM_039800751.1 mRNA upstream 99497 14616611 ~ 14620139 (-) True spryd4
XR_005639168.1 other downstream 290023 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1181773 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1996520 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2043574 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 2212243 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 15010 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 328224 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 328224 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1763930 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3171001 17688115 ~ 17689760 (-) True G50712