RNA id: XM_039799605.1


Basic Information

Item Value
RNA id XM_039799605.1
length 1156
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120558558
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 41945023 ~ 41948527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtccctacaGGGCTGAGTGCTGTCTCATCAGCTGCTGGACTTCAGTACTATTTTGTTTATGACAGGAAGAACTTTACTGAAGCCCAAAGATactgcagagagaaacacacagacctgGTCACTGTAGACAGCATGGAGGTTATGAAGATCCTGACCAACACGGCAGATTTAGACAACATGTTCTACTCCAACAACAGCTACAGAGCCTGGATAGGACTGTCTGGTGGCAACTGGAAGTGGTCACTGTCAGACCCAAGTTTCTACAAACCCGGGGAGATGGAGTTCAGACGATGGGGGACTGGACGACCAACCGTTGGACACAGTGGAAAAATCTGCACAGGGATGCTTTCTAATGGACTCTGGTATGACAACAGTTGTGACAACATCCATTATCCAATCTGTGCAGATGTCAGAGGATCAGATGTGACTTTTGTCATTGTCACCCAAGCTCTGACATGGACTGCAGCCCAGAGCTACTGCAGAGCTAACCACACAGACCTGGCCAGTGTGAGAAACATGGCAGAGAACCAGAAGGTAAAGGCGATGCTTTCAGGAGGAGGTTTATACTGGTTTGGCCTTTTCCGAGACTCCTGGAAGTGGTCAGATGGAAGTACCTCCTCATTCAGCTTCTGGAAGAACGGGCAACCTGATAACAACGGGAACGAGGCTTGTGTGGCTTCAGActtcagccaatcaggagcCTGGGAGGACTGGTCCTGTGACATGGAGAGAGCGTTCATTTGCTACGGTCCAGTGGTGTCTGCTTCAAAGAAAGTGCTGAAAGTGAAGTTTGAGAAGAATAATCTGGATCTGAATGACCCTGCTGTGATGGAGGCCATGTTGAACGAGCTGAAACAGAAGCTGAGGGCCCAGGGGCTGGACGACAACATCAAACTGAGCTGGAGGAAGCAGGCCGATGGAAAAGTCTTCCACAAGGAAGACAAGAAGACcaacaagaggaggaggaagagggaggagctGTAATGTTGAGTTGCTGCGTCTGGTTTCATCAGAGAAAAGTCTGGTTCTTTGTAAGCAGAAATACTAAatatattcacagcttctagCTTCTCAAACATGaagatttgatgcttttctttgtcatatttgGTGATAAACTTAATCTATTTGAGCTTCAGACTTTTGTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76995 lncRNA upstream 25907 41918897 ~ 41919116 (+) True G57327
XR_005639140.1 lncRNA upstream 33152 41906498 ~ 41911871 (+) True LOC120558547
TU76958 lncRNA upstream 64649 41880086 ~ 41880374 (+) True G57301
TU76886 lncRNA upstream 180741 41760876 ~ 41764282 (+) True G57241
TU76839 lncRNA upstream 226918 41543715 ~ 41718105 (+) True G57203
XR_005639144.1 lncRNA downstream 56984 42005511 ~ 42008260 (+) True LOC120558566
XR_005639145.1 lncRNA downstream 56984 42005511 ~ 42008260 (+) False LOC120558566
TU77051 lncRNA downstream 222138 42170665 ~ 42175396 (+) True G57378
TU77059 lncRNA downstream 276820 42225347 ~ 42285955 (+) True G57385
TU77058 lncRNA downstream 335143 42283670 ~ 42285955 (+) False G57385
XM_039799673.1 mRNA upstream 274553 41654765 ~ 41670470 (+) False LOC120558614
XM_039799672.1 mRNA upstream 274553 41654767 ~ 41670470 (+) True LOC120558614
XM_039799671.1 mRNA upstream 338802 41600488 ~ 41606221 (+) True LOC120558613
XM_039799684.1 mRNA upstream 365958 41571688 ~ 41579065 (+) True LOC120558621
XM_039799609.1 mRNA downstream 79245 42027772 ~ 42034763 (+) True LOC120558560
XM_039800506.1 mRNA downstream 456295 42404822 ~ 42411394 (+) True LOC120559084
XM_039799610.1 mRNA downstream 463592 42412119 ~ 42413646 (+) True LOC120558561
XM_039799612.1 mRNA downstream 491475 42440002 ~ 42440899 (+) True LOC120558563
XM_039799602.1 mRNA downstream 614119 42562646 ~ 42575410 (+) True LOC120558555
TU76436 other upstream 815647 41121275 ~ 41129376 (+) True G56947
TU76475 other upstream 842051 41100594 ~ 41102972 (+) False LOC120559073
TU76286 other upstream 1487848 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 1796403 40102385 ~ 40148620 (+) True G56818
TU77125 other downstream 523393 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 1429819 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 1569423 43517950 ~ 43518074 (+) True LOC120559932
TU77790 other downstream 2004031 43952558 ~ 43952942 (+) False LOC120559089
XR_005639290.1 other downstream 2033475 43982002 ~ 43984512 (+) False LOC120559493

Expression Profile