RNA id: XM_039799619.1


Basic Information

Item Value
RNA id XM_039799619.1
length 2542
RNA type mRNA
GC content 0.46
exon number 17
gene id pabpc1l
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17080239 ~ 17098500 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTTATTCTACAGTAGATATCAACTAATTTTGATGCGAAGTGTTCGAAGAAAATTTAGCTAACTTTTTTAGCTAGCCCTCTTTAGTGTTTTCTGATAACAAGTCCATTAATATTTTATGAACTTTAAAATTTGAACTCACTTTCCTGTAGTGCTAGCTAGCTTGATATGTTCAGCTAACGTTATTAAAGTACTGTCATAATTAGGTGACAACATTTTGGTAAATGTTAGTTTGTGAGGCCTTTTTAGCCCAGCATTTAGCCACACTTTCCCCCCCGACATAATTTACATTAACGTACATAGTTTTTTATATATCCTTATTAAGGTGTACTCAATTGTCAGTTTATTAGGTAACGTTACATCTTTCTAGCTAAAATGAATACAGTCTGATATAACGGTCCTGCAGTAGTTAAATCCTACCTTCATGAAGATGAACAGCAGTGGACAAGCGTATCCCCTCGCTTCTCTGTATGTAGGCGACCTGCATTCTGATGTTACGGAGGCCATGCTTTACCAGAAATTTTCTCCTGCTGGACCCATCATGTCGATCCGTGTGTGCCGTGACATCATAACACGCAGATCTCTGGGATATGCCTACATAAACTTCCAGCAACCAGCTGATGcggAGTGCGCCTTGGATACAATGAACTACGACGTTATTAAGGGTCGGCCTATCAGAATAATGTGGTCTCAGCGTGACCCGGGACTCAGGAAGTCTGGTGTGGGAAACATCTTTATCAAGAACATGGATGAGTCGATTGACAACAAGGCGCTGTATGATACCTTCTCAGCCTTTGGCAATATTTTGTCCTGCAAGGTTGTTTGTGACGAGAAAGGGTCCAAAGGCTATGGATTTGTTCACTTTGAAACTCACGAGGCTGCAAACCGGGCCATTGGAACCATGAATGGGATGCTCCTGAATGATAGGAAAGTtCGAAAGACAGGTAATCAGTTGGAATCTGGCATTGTCAACCCAAAGGCCCATTTTCTGGGGGGAACATGTCAGTTCTTCCTGCTTAGTTTTGTTGGCCACTTTAAGTCCCGCAAGGAAAGAGAGGTGGAGTTTGGCAACAAAGCTATGAAGTTCACCAACGTCTACATCAAAAACTTTGGTGAAGACTACACTGATGAGAAACTCATGGAAGTCTTTACTGCATTTGGAAGGACTCTCAGTGTGCGAGTGATGAAGGATGAGAGGGGCCGGTCACGAGGATTTGGCTTTGTAAACTACGCTAACCATGAGGATGCTCAGAAGGCAGTTaatgaaatgaatggaaaggAGATCAATGGGAAGATCATCTATGTTGGTCGGGCTCAGAAGCGGCTGGAGCGCCAGGGAGAGCTCAAGCGCAAGTTTGACCAGATCAAACAGGACCGCATCCAGCGCTATCAGGGGGTGAATCTGTATGTGAAGAACTTGGATGATAGCATAGATGACGAGAGACTCCGGAAGGAATTTGCCCCTTATGGCACCATCACCAGTGCCAAGGTCATGACAGACGGCTCCCAAAGCAAGGGTTTTGgctttgtttgtttctcttcacCTGAGGAAGCAACAAAAGCAGTGACTGAAATGAACGGGAGAATTGTTGCAACCAAGCCACTGTATGTGGCTCTGGCTCAGCGGAGAGAGGAGCGTAAAGCGATCCTGAccaataaatacatgcagagaCTTGCTACCTTGAGGACCATGACGAGTCCGATCATTGACTCTTACCAGCAGGCCGGATACTACATGACTGTACCACAGCCTCCCACTCGCTCCTTCTACAACCACAATGCTGTCAGCAACATGAGACCAGTGCCTCGTTGGACAGGACAACCCCCAAGACTACAGGGCACCTATTCAACCCAGTTTGTTGGTACCTCTGTTCCCCGACGTGGATCGACCCCCATCGCTACGGTCAGACAGGCCTCCACCCAGGCTCCGCGCATTATAAGCTCCACACAAAAGACAAATAACATTGCCACGCAGACTGTAGGAGGGCGTACTGACATGCCTGGTATGACCAGAAGCGGCCAGTACAAGTACTCGTCTGCAGTGAGAAACGTCCAGCAGGTCGTTACTGTACCTGCACCCATGACGAGACTGCAGGTTATTCCTGCACCTGTGATGGAGCAACCGGTGCACATTCAAGGCCACGAGCCGCTCACCGCCTCGATGTTGGCTTCAGCTCCACTCATGGATCAGAAACAGCTTCTCGGGGAGCGATTGTACCCGGTGATCCATGCCCTTCACCCAAACTTGGCTGGAAAAATCACTGGCATGCTGCTGGAGATCGACAACTCTGAGCTGCTGCACATGCTGGAGACACCCGAGTCCCTGCACGCTAAGGTGGACGAGGCGATTGCTGTCCTGCAGGCTCACCAGGCAAAGGAATGCTCTCCTAAAAAGTGAAGAGCCCTTTCAGatGTCAACGACTTTCTGGAGgagggaaaaataaaataaaaagagtaaaattttgaaaaagagatttgtaAAGTTAAAGCTATTTTGTTGTTGCAATACCTTTGGTTAGAAGATAAAGTTTACAGTATATGCA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67483 lncRNA downstream 944 17074875 ~ 17079295 (-) False G50484
TU67482 lncRNA downstream 944 17076941 ~ 17079295 (-) True G50484
TU67485 lncRNA downstream 3435 17074875 ~ 17076804 (-) False G50484
TU67477 lncRNA downstream 5884 17072736 ~ 17074355 (-) False G50483
TU67504 lncRNA upstream 8660 17106834 ~ 17114981 (-) True LOC120559328
TU67505 lncRNA upstream 10264 17108438 ~ 17115029 (-) False LOC120559328
TU67506 lncRNA upstream 10264 17108438 ~ 17114981 (-) False LOC120559328
TU67596 lncRNA upstream 50032 17148206 ~ 17150051 (-) True G50548
TU67598 lncRNA upstream 53143 17151317 ~ 17151938 (-) True G50549
XM_039800425.1 mRNA downstream 78930 17000401 ~ 17001309 (-) True LOC120559002
XM_039800861.1 mRNA downstream 107946 16962272 ~ 16972293 (-) False LOC120559259
XM_039800859.1 mRNA downstream 107952 16961498 ~ 16972287 (-) True LOC120559259
XM_039799623.1 mRNA upstream 451 17098625 ~ 17104961 (-) True LOC120558578
XM_039799624.1 mRNA upstream 451 17098625 ~ 17104934 (-) False LOC120558578
XM_039800974.1 mRNA upstream 10265 17108439 ~ 17115047 (-) False LOC120559328
XM_039800976.1 mRNA upstream 17976 17116150 ~ 17119562 (-) True kctd6b
XM_039800977.1 mRNA upstream 17976 17116150 ~ 17119561 (-) False kctd6b
TU67071 other downstream 796383 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2226422 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2226422 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2545634 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2935017 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 589941 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 741370 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1782191 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2601599 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2603156 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile