RNA id: XM_039799631.1


Basic Information

Item Value
RNA id XM_039799631.1
length 2136
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC120558584
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13243174 ~ 13249562 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTATTCTCTGTAGCTTGATAGTTGAAGTCTCAGCTTGTCACTGTAGCAAGTTGCTGATCGCTGGTGCCAACGCCCGGCGAaatatacagctaacgttagctagcggaGATACGGAGGGATATTGCTAACGTTATTGCCAGCAGAATCAGAAAGTACAGAGATGCAGACTATCAAATGTGTGGTGGTGGGTGATGGAGCAGTGGGAAAAACCTGCCTATTGATTTCATACACCACCAACAAATTCCCCTCTGAATATGTACCTACAGTTTTTGACAACTATGCAGTAACTGTAATGATTGGGGGTGAACCATACACCCTTGGCTTATTTGATACAGcagGTCAGGAGGATTATGACAGGTTACGACCACTAAGCTACCCACAGACAGATGTCTTCTTagtctgtttctctgttgttTCACCTTCCTCGTTTGAGAATGTTAAAGAAAAGTGGGTTCCTGAAATAACTCACCACTGTCCCAAGACCCCGTTCCTGTTGGTAGGCACTCAGATCGACCTGCGTGATGACCCCTCCACAGTGGAGAAGCTAGCCAAGAACAAACAGAAGCCAATCACCCCTGAGACAGCAGAAAAGCTGGCTCGTGACCTTAAGGCAGTCAAATATGTTGAGTGCTCAGCCCTAACACAGAAAGGATTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCTGAACCTAAGAAAAGACGTAAATGTGTTCTGCTCTAAGTGTCGTCGCAGCCTTCTCAACACCAGTTTCCAAATCTAGGTTAACAGTACTGAAGAGGTTTGTTGCACAAGCGCATTCCGACATGAGTTAATATATTATGAAATATTTGCCTTCTGACTGACTTAACCTAAATACATATTCAATGTGTTGAACGTGATTTTTAAGATTGAGTAACATTTGATGCTGTTTGTGATGATGTGATGGCATTGAAATGATCTTACATGTTGAATCAGTTTACAGTATATCAACAAACTGTAGGTGACATTTCAGTTAGACCACATTATGTTTAGAGTTAATTTTGCAGAAGTGCTATTCCAAAAGAACAGACTATGAAATGGTATTTTAATAGATCTCATGTTTTATTGACTGCCCTGTGAAACACGAACAAGCTGATAATGTTGGGTTAGTGAGCTACTCCAATTATGTCTTAGTGTACTCTacatctgattttttttattttttacttgtcAAGTAATTCCcttagtttttatatatatcgGCATAGAACGccagtattttgttttctaaacatttctttaagaatgatacatttttcaaaaggtCAATAGAAGTTGCTGTATTTTActcatttttgacattttgatatCTTCATGTTCATTGACAGCATAGCCTCCAGGGCGATCTAAGGAATATTTGACTGAATATGACATTTCTAGGCTATGCTCCATCATAGTTCTAGTTTGCCAAAACATAACCTGATAAATTGACACTTGTCAAAGTAGAGATCCACAAAGGCTGACAAATGATGGCAGAAATGTATGGAGTTTTAAATGCAACGTTAACACTTCATTGGAAGTCATTTATCACAAATAGCCAAGCAAGGAGTTGGAGCACAACAATTTCACAGTCATTTCCTTTTTCTGACAGGAGTGAGTTAACAAGAAGGTGATGTGTGCCCTGAATGCTTATCAACTGTTGCAATAGCTGAAACTTTGTAGGAGCATTCTGCTTATAACCCCAGGCTAATACACTATTTTGTAAACCGAACATACTTGCTGCTGAAGTCGGAAAGTAACACGTTGTGGCAGTTCTTACAAAATGCTATACATAGTTTGAAACCCTGTGAAGATTTTGGAATGACAGAACTAGCACCATTTGCATTTCTCTTGCCATGCCTGGATGATGGGCTTGAATTTGACTTGTAAATATAGTGAGAATAATTCATAACTTATTGACTGAATACAATGTGTCTGTTACTGATACAGATATGTAGAGGAGATGAGATGACAGTGAAATCAAAATGACCAGGAAAATGTTGAGAGAACAAGGACTCTTTGGTCTTTATTCAATTTGACATCAAAGTTGTTGTGTATCTTGCTTGTGATAAAGCAGTACAATAAACCAGTATTATGAATAAACCTAACTTCAAATACTA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65973 lncRNA downstream 21932 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 318846 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 404042 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 463854 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 471755 12768820 ~ 12771419 (-) True G49372
TU66015 lncRNA upstream 32425 13281987 ~ 13284250 (-) True G49447
TU66052 lncRNA upstream 58955 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 58955 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 58955 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 105555 13355117 ~ 13357805 (-) True LOC120558463
XM_039799633.1 mRNA downstream 6064 13236216 ~ 13237110 (-) True dhfr
XM_039799528.1 mRNA downstream 21836 12924458 ~ 13221338 (-) True camta1a
XM_039799520.1 mRNA downstream 328093 12896793 ~ 12915081 (-) True ccdc187
XM_039799634.1 mRNA upstream 1424 13250986 ~ 13253608 (-) True LOC120558587
XM_039799635.1 mRNA upstream 9763 13259325 ~ 13262798 (-) True mfsd4ab
XM_039801959.1 mRNA upstream 42952 13292514 ~ 13299992 (-) True LOC120559884
XM_039801960.1 mRNA upstream 42952 13292514 ~ 13296393 (-) False LOC120559884
XM_039801961.1 mRNA upstream 42952 13292514 ~ 13295760 (-) False LOC120559884
TU65695 other downstream 804449 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 851503 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1020172 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1073965 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 1114749 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 2850 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 890818 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1282562 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1595776 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1595776 14845338 ~ 14853817 (-) False G49845

Expression Profile