RNA id: XM_039799635.1


Basic Information

Item Value
RNA id XM_039799635.1
length 1975
RNA type mRNA
GC content 0.46
exon number 10
gene id mfsd4ab
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13259325 ~ 13262798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTGTGGATGAGCGGATTGTGACTCTGTTTAAGAGGAATGCCCATCACACACTCACCTACTGGAGTGTTTTCTTCAGCTTTGGACTCTGCATTGCTTTCCTTGGACCTACAATTTTGGACTTGCAATGTCAAACAAAGTCAACACTTAGTCAGATTACCTGGGTATTCTTTGCCCAGCAGTTCTGCTTGTTGATTGGCAGCTCTATTGGTGGTTTTTTCAAAAGGACgttGTTCAGTGCTCTAGCTGCCCTATTTGTCTCTGCTCTCACCATCTCTGTAATATTTGCCATCATCCCTCTGTGCAATAATGTTCTCGTGCTTGCCGTCGCTATGGCTGTGTCTGGGTTTGCGATGGGCATCATTGACACCATCGCTAACATCCAACTGGTGTCCATCTATCAGAGGGACTCAGCTGTTTTCTTACAGGCTCTTCATTTCTTCATTGGCTTCGGAGCCCTGGTGAGCCCACTGATTGCTGATCCTTTCCTCTCAGAGACGGGCTGTGGGAATCACACAGAGAATGGGACAGAGATCATGCATCATTTCAGGAACATGCTGAGAAACAGTCCGATTGCGGAGCACAACATAACTCAGAGCAACCTGCCATATCACGAGGGAGAGATAGAGGAGTCCAATGTGCACTATGCTTTCTGGATCATGGCACTTATCAATCTACCCGTGCCAATTGCAGTCCTGTTCCTGATGTATCGGGAGCAGCTGATCCCATGCTGCCCCGGCGGTACTCCTCGTCTTCTGGACAAAGATGAACTAGCAATGGAGAACCAGCAGGGGGCAGAGGGCTCGGACGTGGAGCAGAAGGAACATGAAGCTGGAGGTCACGGGAATATCTTTAGCTGCTGTCAGAATGATAACCTGCGCGGACTGCCAGTATCCTTCTTTATGATTCATATCCTCGGTGGGATGGTGCTCTTTATGACCGATGGTATTGTGGGTGCATATGCCGGCTTTGTCTACACCTACGGTGTGTCACCACCTATATCGTTGCCTAATAAGACAGCGGGTTACCTGGCCAGTATCTTTTGGGCAGCCATCACTGCGGGACGCCTATTGTCCATTCCTCTCTCGTACCGGTTCCAGCCTGTGAGACTGCTCATGTTCAACCTAgcaGGTGCTATTGTTACTGTCTTGATGCTGCTTATTTTCTACACCAGCAGCACCTTTCTGTTTGCCGGGACATTTTTTTGTGGGCTTTTCCTCAGCAGCATATTCCCCTGTATGCTCGCCTATACTGAAGACATCCTTGATTATCAGGgatGTGCAACGTCAGTCCTGGTGACAAGTGCAGGGATGGGAGAGATGGTAATGCAGGTTCTGGTCGGCTCAATCATCCAGGCCCAAGGCAGCTACAGCTTCCTGCTGTGTGGAATGATAATCGCCTGCCTCGGTTTTATCCTCTTTATTGGTCTCCTGCTGTTCCATCGAATGCATAGAAATTACCTCACAGGAACGACGAAAAAGTCAGCCATGGTGGAGGAACCAGCAACAGAACAGAATGGGTCTGccaaaacagaacagaaagaagagacagagagcagctgaGAGGGGCAGTAGCGGTGTTTTGTCCTCTACTGGCGACTGTAGGGGATGTAGTATTACAACAATCTATCCTCAAAGATGATggatcaaagatgttttatcaaagGATAGTGAATGAACATTTCGCCGATGTACTTTTATTTTGCTGGAAATTACATATTTgcaaagtagatttttttttttttttcggttttgtAAATCACAGACAGCGTTCATCAAATTGTGGTTTGGTGTTCTGTTTTATATAGCATCAGCGTTTGAAATTTACAATACAAGGATTATGATCACCTGTAGAATACTTCTGTTTTCTATTGGATGTATCAATTGTAATCCTGTGTTTTCAAactgttttatgtgtttttgcaTATCTTTTGGCATATGTACATGGAATACTGTATAATATGTGTATTAAAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65973 lncRNA downstream 38083 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 334997 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 420193 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 480005 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 487906 12768820 ~ 12771419 (-) True G49372
TU66015 lncRNA upstream 19189 13281987 ~ 13284250 (-) True G49447
TU66052 lncRNA upstream 45719 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 45719 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 45719 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 92319 13355117 ~ 13357805 (-) True LOC120558463
XM_039799634.1 mRNA downstream 5717 13250986 ~ 13253608 (-) True LOC120558587
XM_039799631.1 mRNA downstream 9763 13243174 ~ 13249562 (-) True LOC120558584
XM_039799629.1 mRNA downstream 9763 13244763 ~ 13249562 (-) False LOC120558584
XM_039799630.1 mRNA downstream 9766 13244763 ~ 13249559 (-) False LOC120558584
XM_039799632.1 mRNA downstream 9783 13244763 ~ 13249542 (-) False LOC120558584
XM_039801959.1 mRNA upstream 29716 13292514 ~ 13299992 (-) True LOC120559884
XM_039801960.1 mRNA upstream 29716 13292514 ~ 13296393 (-) False LOC120559884
XM_039801961.1 mRNA upstream 29716 13292514 ~ 13295760 (-) False LOC120559884
XM_039801957.1 mRNA upstream 44790 13307588 ~ 13328250 (-) False LOC120559881
XM_039799445.1 mRNA upstream 45562 13308360 ~ 13309625 (-) False LOC120558437
TU66001 other downstream 5853 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 820600 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 867654 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1036323 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1090116 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 877582 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1269326 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1582540 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1582540 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 3018246 16281044 ~ 16283856 (-) True G50217

Expression Profile