RNA id: XM_039799724.1


Basic Information

Item Value
RNA id XM_039799724.1
length 2338
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120558639
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22081519 ~ 22090163 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAGCCTAGCTACACTGTTCGCAAAATCTACTAGATGTTGTTaatatatgtcaatggatgTTCCTCCAGGAagcacacacagtcaaactcaaacaagaaaaaggaagaaataaaCAGAATAAGAACCATCTCTCAGCTCTTCATTTCAAACTCTGGAATATTTGCCTTAAGTGGTGTTCTGGCTGACATACCTGAGTGAACCTGTTTCACAATGCCAGAAAAATCATTGAGAAAATGTTTAGATCCATTTTTGGAATAAAATTCTTTACAAGACCTCGGTCTTCAGGAGATATGGACTCTTCTTCGAAGAAGTCCAAACGAAGGAGTGAGAGACCTTCGTCTCTTGAAGACCTCAACCCTCCCACCATCTTGAGGGAGCATGGACGAAGGGGTGAGAGACCTTCGTCTAGTGGAGACACCAACCCTTCTACCATCATGAAGGAGCACAGATAAAGGTGTGAGGGCCCTTTGTCTTGTGCAGAAAACCAGCCCTCTATCACCAGGCAGCAAGAACGAAGGGATGTGAGCTCTTTGTTCATCGTGGGCACCAACCCTTCTACCATCATGAAGGAGCGCAGGCAAAGGGGTGAGAGCCCTTTGTCTTGTGCAGAACACAAGCCCTCTACCACCAGGCAGCACGTACAAAGGGGTGACAGCCCTTCCTCTACTCCAAGGCGGCAGCAAGCATGGAGAGGTGAGAGCCCTTCATCTACTCCAAAGCGGCAGCAAGCATGGAGAGGTGAGAGcccttcctcttcatcttctGAAGACAAGCAGCCTACTACTCGGAGGCGGCAGCAAGCATGGAGGGGTGAGAGCCCTTCGTCATCATCTTCTGAAGATGACCAGCGTTCTACCTTAAGGCAGCAAGTACGAAGGGATGTTCATCGTGGGCACCAACCCTTCTGCCATCATGAAGGAGAGCAGGCAAAGGGGTGAGAGCgctttgtcttcctcttctgAAGAGGATGAGCCTTCTACCACCAGGCAGGCAGTACGAAGGTTTGAGAGCCCTTCCTATTCATCCTTTGAAGACAAGCAGCCTACTACTCCAAGGCGGCAGCAAGCATGGAGAGGTGAGAGTCCTTCGTCGTCATCTTCTGAAGATGACCAGCGTTGTACCACCAGGCTGCTAGTACGAAGGGATGTGAGCTCTTTGTTCATCGTGGCCACCAATCCTTCTACCATCACGAACGAGCGCAGGCAAAGGGGTGAGAGCCCTTTGTCTTGTGCAGAAAACCAGCCCTCTACCACCAGGCAGCAAGTACGAAGGTTTGAGAGCCCTTTGTCGTCATCTTCTAAAGATGACCAGCGTTCTACCACCAGGCAGCAAGAACAAAAGGATGTGAGCTCTTTGTTCTTCGTAGGCACAAACATGAAGGAGCGCAGGCGAAAGGGTGAGAGCCCTTTGTCTTGTGCAGAAAACATGCCCTTTACCACCAGTGCAAGAAAGGAGAGGGAGATCATtgaaagagaaaagcagcatttggaggaggagggtttaaaaagagaaagagagaggtgtgaaaagatgaagagaaagaaccaggagaaggagaggaaaacaTTTGGTCTGCGTTCAAGAATGTACATTTGGTGGCTCAATTGCAAGATAGACAACATTGCCAGGGACATCCAATCAACCTTTGTGGATGAGCGCTACCGCCTGCGTCATGATCCCCTCAGAAATCCAgagaaaatggcagaaaaagaACGGCTGCTTGACCGAAGGAGGGAGCTGGTCATGTACAAACGCAGACAAGAATTTAAGGTGGAGAGGGAAGGGAGGAAGCAAAGACTGAAGGTAGAGAGGAAGGAAATAAATGCGAAGAAGTTGGAGAATATCTCTGAGTTATGCAGCAACTCAGAATACCCAGCTATGTTAAAATTTCTCTACGGACCAATGCCAGTCAggtcacatatatatatatatcaattaaGATAAAAGTAGAGCAATCAGAAAAATGGCACCAAATAGAGAGAGGTAATTGAGGGAGACGGCAAAAACTTCAGATTTGACAAAACAGaagtaaagaaaagtaaaatattcttttaaaacattagcaaccaCCATCAAATATCCTTGTAACCACATGATAACACCCTAGATGTTGGCTTTAATTTAGTTATACAGTCAAAGAGCATTGTGCAAATAACAGTGTCCTAACTTAATGCCACCTGACCCAATCTAATTCATCCTAACCTAGGCTAATTTAACCAAGGTTAGCCCAACACCTATCCTAATTTAGCTTTGGTTAGGCTCTGGCAGAGaccttagggttagggttagaccctaaagacagtagaaagaaggaaggcaacactagggcgacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639343.1 lncRNA downstream 1063 22079899 ~ 22080456 (-) True LOC120559667
TU69459 lncRNA downstream 20595 22060712 ~ 22060924 (-) True G52013
TU69456 lncRNA downstream 26420 22053714 ~ 22055099 (-) True G52010
TU69455 lncRNA downstream 33790 22046768 ~ 22047729 (-) True G52009
TU69412 lncRNA downstream 123808 21957461 ~ 21957711 (-) True G51978
TU69595 lncRNA upstream 154474 22242523 ~ 22243328 (-) True G52126
TU69593 lncRNA upstream 155762 22243811 ~ 22266053 (-) True G52124
TU69596 lncRNA upstream 159061 22247110 ~ 22248083 (-) True G52127
TU69597 lncRNA upstream 160088 22248137 ~ 22248720 (-) True G52128
TU69607 lncRNA upstream 215116 22303165 ~ 22303794 (-) True G52135
XM_039800164.1 mRNA downstream 4683 22065075 ~ 22076836 (-) True ssr4
XM_039800927.1 mRNA downstream 58873 22016334 ~ 22022646 (-) False fam3a
XM_039800926.1 mRNA downstream 58873 22016334 ~ 22022646 (-) True fam3a
XM_039801655.1 mRNA downstream 66478 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039799722.1 mRNA upstream 4457 22092506 ~ 22103785 (-) True LOC120558638
XM_039799726.1 mRNA upstream 17574 22105623 ~ 22109059 (-) False naa10
XM_039799725.1 mRNA upstream 17574 22105623 ~ 22109059 (-) True naa10
XM_039799727.1 mRNA upstream 17979 22106028 ~ 22109060 (-) False naa10
XM_039799731.1 mRNA upstream 32551 22120600 ~ 22124974 (-) True LOC120558646
XR_005639356.1 other downstream 66476 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639338.1 other downstream 882476 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 1129001 20920699 ~ 20952518 (-) False LOC120558386
XR_005639375.1 other upstream 135100 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 441557 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1126049 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1126049 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU70089 other upstream 1220451 23308500 ~ 23319684 (-) True G52501

Expression Profile