RNA id: XM_039799743.1


Basic Information

Item Value
RNA id XM_039799743.1
length 3579
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC120558654
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9787365 ~ 9881696 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGGCTCATCAGAGAGAGAGCGGGACTGAGCGAGTCGACTGAACCGCTGCAAGGAGCACGAGACGGCGGAAAGGAACGGACCGTGGTATCGGATACTCAACATAATTACCTCTCTAACCCCCTTTTACTGTTACTCTTCACCCAGCCAGGAAATGACATCTGTATTCTAACCGCGTTTAAACGTCACTCTCAAGCCCAAGATGACGGTGGACTTTGAAGAATGTATTAAAGATTCACCCCGCTTTAGGGCAAATATTGATGAGGTGGAGACAGAGGTGGTGGAGATCGAGGCGAAACTAGATAAGCTGGTGAAGCTATGCAGTGGGATGATTGAAGCAGGGAAGGCGTATGTTAGCGCCAACAAGCTCTTCGTCAACGGCGTCCGGGATTTGTCCCAGCAGTGCAAGAAGGATGAGACGATCTCGgAGTGCCTGGAGAAGTGCGGCGAAAGCCTCCAGGAAATCATCAACTACCACATGATCCTGTTTGATCAAGCTCAGCGGTCTGTAAAGCAACAGTTGCACAACTTTGTGAAAGACGATGTTCGCAAGTTCAAGGAGACCAAGAAGCACTTTGACAGGGTGCGCGAGGATTTGGAAATAGCGCAGGTGAAGAACGCTCAGGCGCCGAGGAACAAGCCTCACGAGGTGGAAGAAGCCGCCGGCACATTAAGCATCACTCGCAAGTGCTTCCGACACCTCGCTCTGGACTACGTACTACAGATCAATGTCCTCCAGGCGAAGAAGAAATTTGAGATACTAGATGCTATGCTGTCCTTCATGCACGCCCAGTACTCGCTGTTCCAGCAGGGCTACAACCTGCTGGATGAGATCGACCCCTACATGAAGAAACTGGCTGCTGAGCTGGATCAGCTGGTGATTGATTCAGCCATGGAGAAGAGGGAAATGGAGCATAAACACGCAACCATCCAGCAGAGGACCCTCATGCAGGACTTTTCGTATGACGACTCTAAGGTGGAGTTCAACGTGGATGCTCCTAATGGTGTGGTGATGGAGGGCTACTTGTTCAAGAGGGCCAGCAATGCCTTTAAGACCTGGAACAGacgGTGGTTCTCCATACAGAACAGTCAGCTGGTCTATCAGAAGAAGCTCAAGGATTCTCTGACGGTGGTGGTGGAGGACCTCCGGCTGTGCTCTGTTAAACCGTGTGAGGACATCGAGAGGAGGTTCTGCTTCGAGGTCGTCTCCCCCTCTAAGAGCTGTATGCTTCAGGCTGAGTCTGAGAAGCTAAGGCAGGCGTGGATTCAGGCAGTTCAAGCTAGCATTGCCTCGGCCTACAGAGAGAGCCCAGACACCTACTATATAGAGCATTTGGACCGAACCGCCTCTCCGTCCACCAGCAGCATCGATTCGGCCAGTGAGCCGCGGGAGCGCAGCGGGCGCGGGGAGAGCATCCTGCAGCGGATCCAGTGCCTGCCGGGGAACCAGCAGTGCTGCGACTGCGGCCAGGCCGACCCGCGCTGGGCCTCCATCAACCTGGGCATCCTGCTGTGTATCGAGTGCTCCGGCATCCACAGgaGTCTCGGAGTTCACTGTTCGAAGGTTCGCTCACTCACGCTAGACTCATGGGAACCAGAATTATTGAAGTTGATGTGTGAGCTTGGAAACAGTGTCATCAACCACATCTATGAAGGCTCATACCAAGAACAAGGTCTAAAGAAACCATTACCGTCCAGTTCAAGGCAGGAGAAGGAGGCTTGGATCAAAGCGAAGTACGTCGAGAAGAAGTTCCTGAAGAAGCTGGGCTCCACAGAGATCCTCATCAACGGAGAGAGGAAGTCCGAGCGGCGGTGGAGCGTGAAGAAGTGTCGGAGACACAACAGTGCCACCATGGTACCCAAAACACGGCGAAGATACCGACAAGAGCCTGGCAGCACCTCGCCGTCCACCCTCTCCTCAGCAGCTGCTAAGTTCAGACGAGACTCCCTGTTTTGTCCTGATGAGCTGGACTCTCTCTTCTCCTACTTTGACACAGGATCTGGGCCTCGAAGCCTGAGCAGCGACAGCGGCCTGGGAGGCAGCACTGACGGCAGCACAGACATCCTGGTGTTTGGCTCCGTGGTGGACAGCGTCACAGAGGAGTGTGAGGTGTCGGAGGACTCGAGCGGGGAGGCTGAGCTGGAGGCGGAGGCGGAGCCGGAGACGTCGGACCCGGAGGACACGAGGGACCTTCATCCCGGAGCGCTGCTCTGCAAGTCCTCCAAAGCCCGCAACCTGCCCGTCATGGCTGAAGCCCTAGCCCACGGGGCCGATGTCAACCTGGTCAACGATGAGGACGAAGGAAAGACGCCTCTCATACAGGCCGTGATCGGGGGTTCACTGATCGCCTGCGAGTTCCTGCTCCAGAACGCTGCTGACGTCAACCAAAGGGACGCGAGAGGGAGGGGCCCCCTGCATCATGCCACATATCTGGGACACACGGGGCAGGTGTGTTTATTCCTAAAACGGGGAGCGACACAGAACGACGGCGATGAGGACGGCCAGGACCCTTTGAGTATAGCTGTACAGCAAGCCAATGCAGATATAGTCACACTGCTGCGTCTGGCCAGGATGAACGAGGAGATGCGGGAGTCGGAGGGACCCTTTGGACAGCCAGGAGACGCCACGTACCTCGACATCTTCCGGGAATTTTCCCACATGGCATCGCACAACCCGGAGAAGCTGAAACGAAGGAGTGTGCACTTCCGACACTCCTTCAGGTAGTCCACCAATGAAGCGTCTGCAGAGAACAAAAACATGTAACAGCCACTTTCCACAGACACTCAGTTGGGGTCGTATCATCACATGTAAACCTGGTTAGAAAAGGATCATATTTTTATCATAATAAGTTACCCAGCCTGTTTTATTCCGCAGAGAAATGTACCTTAAAGTGCATCAAAGTGAAGAAATCTTGGCAACTTTTATGCAGTTTTTCCATTGtcatgacatttttacagtagcTGCATTTATATCTGCAAGAGTCTCGTGCTGTTCTTAGATCaaccttttattttgaaatggggATTTGCTGGTCTTTTCCTCTTCGAATgcttttataataaataaatatattattgctTTTGTACATTGTTAGATGAAACTttttggataaaatgccaagcacttcttttgttttttgttttcattagtTTGCAGCATCAGTTTCATTATTTAGATTATTGAAGGAATGCtttacataaacacattttttgttgtgtgtgtaatgcaTGCATTTGCCCCGATTATATTTCATACTTAAACTTGAATTCAGCTGTTGTATGGAATAAGAGTGTCATATCATCAGTTTTCATCGTCAACAATCTTGAAGTCGCAGTATTATTTCTCTCGATGAGCGGTTTattttgtcataaaaaaaatgtgcttTTCTTGCATCGACTATGCTGGTGTAGTCTtggtaatgttttgttttgttgagatGTACTTCGCAGTACCACTACGAAATGCAGTGCTTATGTTACTGTATACATGCTGTAGAAGTAAAAATGCTAATATATCTGAATGAACAGGAATGCAGATGAAAGATggaagaataataaaaaaatggtcTGTGTTTACACA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64692 lncRNA downstream 2124 9783714 ~ 9785241 (-) False hipk1a
XR_005639087.1 lncRNA downstream 21176 9764068 ~ 9766189 (-) True LOC120558310
TU64671 lncRNA downstream 24916 9760890 ~ 9762449 (-) True G48436
TU64672 lncRNA downstream 57286 9728225 ~ 9730079 (-) False c1qtnf12
TU64729 lncRNA upstream 11272 9892968 ~ 9893826 (-) True G48479
TU64726 lncRNA upstream 34882 9916578 ~ 9918879 (-) True G48477
XR_005639099.1 lncRNA upstream 132707 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA upstream 132707 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA upstream 133271 10014967 ~ 10016118 (-) False LOC120558372
XM_039799740.1 mRNA downstream 3512 9766311 ~ 9783853 (-) True hipk1a
XM_039800367.1 mRNA downstream 33679 9729668 ~ 9753686 (-) True c1qtnf12
XM_039800366.1 mRNA downstream 35708 9729668 ~ 9751657 (-) False c1qtnf12
XM_039799984.1 mRNA downstream 89044 9689729 ~ 9698321 (-) True olfml3a
XM_039799252.1 mRNA upstream 8859 9890555 ~ 9901658 (-) True LOC120558325
XM_039800987.1 mRNA upstream 22612 9904308 ~ 9916135 (-) True ints11
XM_039801489.1 mRNA upstream 43481 9925177 ~ 9933192 (-) True zgc:193690
XM_039801810.1 mRNA upstream 96557 9978253 ~ 9985133 (-) False mul1b
XM_039801809.1 mRNA upstream 96557 9978253 ~ 9985133 (-) True mul1b
TU64679 other downstream 63231 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 89258 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1599814 7771936 ~ 8187551 (-) True G47934
TU64778 other upstream 143298 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 761023 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2007245 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2245190 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2245190 12126886 ~ 12128425 (-) True G49083

Expression Profile