RNA id: XM_039799770.1


Basic Information

Item Value
RNA id XM_039799770.1
length 5324
RNA type mRNA
GC content 0.54
exon number 17
gene id fam120c
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7612487 ~ 7632545 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCCTTCCCTCCCACTCAACTGGGCCGCGAGGAAGTCGCAAGATGGCTGATGTCGCTTGGAAGTAATGTTCCCCTCTGCAACATGAAGCCGTGAGTGTGGAAGAAAGCGAGGGAGGCACCATcgggcttttatttttattttattttagttacttttcttttatttcgTCAAACATCCATCTCATTCCGCGTCGTGTCCGCCCCGGACTTGTCTTCGGGAGTTGACGCGTCAAATCACGCCGGGGACCCTGccagcagctaacagctagccacaTAGCTAGCAAACGTTAGTAACGTTACAGCTAGCCAGTCAGCCAGGCACATAGCTTGTTAGTTTGTTCTAATTAATATTCAGACACCTGCGAGCCAACAAGCTACCGATACAAATATGCTAAGATTTGCCTGAGGTAGTGCAGAATAAATGTCAAATATTTTCGttgtcagataaaaaaaaagaataaccaTTTTGCAAGCTGCTCGGTTTAACATCATGTCCGCGAACTGGCCATCTAGCCTGTGGTGTGCTAACTAATGCGCAGTATTGCATCTGTTTCATGTGCACAAACCAGCAGGATCATtattttattggcatttttcaATAATATCCACCACCTTGCTGCATTTCCGTTATTTGCTGCCAACTACATTTTTGAAGCTGGTTATGTTAAAGCCAAATTATGGGAGCAGGAAATGTGTTGAACTTTTTCTGGTTGTAGGTAGCTACACTGGCCTTGCTGGCATCTCACCAAAAATCCACAGGGATGGACACTAAACTGAGAACCCACGACCAAAACTGAGAAATTGGCATTTCGATATATCGGAATAAGTAACGACAAGTGACACGCGTGTACAGCGCTGTATGGTGACTAATTTCACTAGTCTGGGTGACAGATAAGTTGTTTTGCAGGGTTAACTAAACTACAGTTAGTCACTACATCGGAGACCAGTTAGCTTGCCTAAAGTGCATAGCTAGCTACGGTCTCGCCCCACATCACATTTCAAACACGGCGTACAGAACGTATTCAGAGCCTGCTCCCGGCCAGACACACCGGCTTAACAACACAGTCATGGGAGTGCAGGGTTTTCAAGAGTATTTAGAGAAGCGGTGTCCCGGGGCCGCAGTCCCGGTGGACCTCCTGAAGCTTGCCCGTACCGCGGCCCGCCAGCCCCCTCACCACCATCACCCACACCACCACCCACATCACCCAGGGCCCATGCCTCCCCCGCCCCCGCCTGCCAGGATCCTAATCGACGCTGACTCCGGCCTGCAGCGCCTCTACGGCGGCTACCAGACGGACTGGGTGTGCGGGGGCGAGTGGAACGCCATGCTGGGCTACCTGGCTGCCCTGTCGCAGGCCTGTCTGTACCAGGGTGGCCTGGAGCTCGTCGTGGTTTTCAATGGCACATTGGGGAAGGAGCGCTGGCCCGAGTGGGCGCGGCGAGCGCAGGGCCAGCGACAGACGGCGCAGCTGATAGTCAACCACGTCGGCAGCAAGGCCACCCCGCCTCCCCGGGCATGGTTCCTGCCCCCGGCCTGCCTCAGCCACTGCGTCCGCCTCGCCATGTTCCGCTTCCGAGTGCGGGTTGTACAGACTTTGGAGGACCACCACCAGGAAGTGCTGTCTCTCTACAGGGACTTTGGATTCGCTGGCCTCATTGCTCAGGATTCTGAGTTCGCCCTCTGCAACGTACCCGCCTACTTCTCGTCGCATGCGCTCAAACTGAGCTGGAACGGCAAGAACCTGACCACGCATCAGTACCTGCTGTCTGAGGCTGCCAGGCAGCTCGGGCTGAAGACACAGCACCTGCCCTGCTTTGCTGCTCTGCTGGGAAATCATATTCTGCCTGATGAGGACCTGGCTGCCTTCCACTGGAGTCTGCTGGGACCAGAACACCCACTAGCTTCTCTTAAGGTGCGAGCCCACCAGTTGGTGCTGCCGCCCTGCGAGGTGGTGATCAAGGCCGTCTCGGAGTACGTGTCCTCCATCAAAGACCTGGGGAACCTCGACGCCATCGCCAGAGATGTCTTCAAACAGTCACAGTCTCGTATGGAGGACAAGGTGGAGCGATTCAAGAAAGCTGTGGAGTACTTCTCCGCCGCCTCCAAACCTCGCTCGCCCAACATGGGGCCCTCCTCTTTTATCTTACCTGGGTTTGGATTTGGGGGACCACCTGGTCACATGGGACCTATACAGCCTGGAAAGAATCAGTTTCCTCCTCCCCAGGTTCCAGGGTTAAAGCCACCCTATCAGAATGCTCCATACGGACCCGGCTCCAACCCTCTGTTCCCGAACGCGCCGCCACCGTCCCAAGACTGCAACGATTCGCTGACGAGCAAGATGGGCTTCTCCGATTGGTCGGCTCCATATGATTCCACTCAGGGGGGAAATCGATTACCCAATCATCACGCCGCCACTCAGTCTGTTCCCTCTCCATCTCCTTCATCGTCATCAGACGGAGATGAACCTAACGACAGCAACGCAAACCATTTGACAGACAAGCCCTCTCGGTGGGAGGATCCTGCTGGAAGGGGGGGCTCGGCCTCCGGAGATGGTTCCCAAGGCAACGGGAGCGTGTCACACATTCCGTCACTGCTGTCTATGGCGACGCGGAGTCACATGGACATAACCACACCCCCTCTGCCTCAGGTCAGTGCTGAGGTTCTTCGTGTAGCCGAGCACAGACATCGAAGAGGACTGATGTACCCCCAGATTTACCACATATTGACCAAGGGAGAGATGAAGATGCCAGTGTGTATAGAGGATGAGTGTAACTCTGAGCTGCCTCCTGCCTCTCTGCTGTTCCGCGCTGGCAGACAGTATGCCTACGGCGTCCTCTTCAGTCTGGCTGAGACACACCGCCGCCTGGAGAGGCTCGCTCTCCGCAAGAGGGCTCCCCTGGAAGTTCCTCCAGTGATCGTCAAAGAGTGGAGCAGCGGTAAAGCCAAGTCGGCCCTGACTCCGGAGCTGGTCCCGGCCCTGTGTTTCAGGGAGTGGACCTGCCCCAACCTGCGGCGGCTGTGGTTGGGACGTGCCAGCGAGGACCGCTCCAGGAGAACCAGGGCCTTCCTGGCCTGCCTACGCTCTGACTGCCCAGCCCTCCTCAACCCAGCACAGGTCCCTCAGCATCTGCTGCTCATGTGCTGTGTGCTCAGGTATATGATGCAGTGGCCTGGAGGAAGGATCCTCCAGAGACACGAGCTAGATGCCTTTCTGGCTCAGGCCGTTTCCAGCCAACTCTACGAACCCGACCAGCTACAGGAGCTCAAGGTGGAGAAGGTGGATGCCCGTGGCGTGCAGCTGGCTTCTCTCTTCATGGCGGGTGTCGACACAGCGCTGTTCATCAATGATGTGTGTGGCCAACCGTTGCCGTGGGAACACTGCTGCCCCTGGGGCTTCTTTGACGGCAAACTGTTTCAGAGCAAACTGGCCCGGGCTGCTCGCGACCGGGCCGCCCTGCTGGACATGTGTGAAGGGCAgGAGGAGCTGGTGTCCAAGGTGGAGAAGATGCGTCAAGCAATCCTCGAGGGCATCAACCTGTCCcgccctcctccccctccccctcctcttccaCCTCCCGCCTTCCTCCCCCCAGCCATGGTGCCCCCTTTCTACCCCATGCCTCCCCTCTACCCACCCCGCCCCATGGACAtgcctcatcatcatcatcacccgCATCACCCGCATCACCCTGCCCAGCACAGACCCAGAGCCTTCCCAGGACTTCAGTCCATCCCCCCTCAGGGAGGGAAACTGGAGATAGCTGGCATGGTCGTTGGCCAGTGGGCTGGGAACAAACCAGTCCGTGGGAGAGGGGGGTTCAACATGCATGTGGTGTCCGTGGGAGCAGGCAGAGGGAGGGGTAAAGAGATTCCAGCTAAAGTAAGGGCGGTGAAAAAGGCACCCACCAACAGAACACAGACTTCGCCGCCCCCCCCATCCAGCAGTCCCCCAAAGCCCTCAGAGGAGGCGGCCTGCACGCCAGAGGTTGCGACTCAGCAGCTGAACGGTAGCTCAGCTGCCTCAGCCATTGGCCAGCCCTTGGAGCTGGCCCCCCTGGCCCAGCCAATCCCGTGTGCCTTAGCCAGCAGAGACAACCAATCCGAGGGGGTGGAAGTGGAGGCCCCCTGTTGCCTTGACGACTGCCCGTCAGACGGAGCGCTACAGAAGGAGGAGTGATGGCACCCTTCCCAGGGTGCACTGCTCTGAGAGGGTTCTCTGTGTTTGACTGCCTTTCCCTGTTTTTTGTAGCCCTGCCTGCTAGCTGTGCACATTACCACCTGGAGCAGGAGGTCCTCCCTGCTGCTCCACGTGGTAGGCTAAAGCAGTTAGCTAGTTACTTCCTTTTTAGTTTTCTCATGTggttttacattgttttatgaAGAGAGTTTTTCCTCCATGAGTCTGTAAGCGCCCCACCCCTCAAAAATCCCAAATGCCTCCCTCCCGCACTCAAGAGTATAAAATAAGCTTGAAGCCCCACCCCTATTACGACCCACCACCTAAACGATAacttattttaaacttttattatattattattatttttttttttgcaatggtCCCGTTGTTGGAATCTCTGCACACAGCTGTTAAGCGCGTGGTTTCGGTGACCGATTGGATGTGGTTTTCCATGGTTGCATCATCTAGGCCTGGTCGCCATGGTCGgtagttgtgtgtttgttgccaTAGCCGTCTCGTGTGAGGTTTTTGTCTTGCATTAATTCAGAGTTTGACTCTGGATATGTGAGTAAGATTTTAACAAAGTGATTTACCATTCTTTTGTGCAGTGacctcccacccccacccaccccacccACCCGACCCACCCGTAGTACTGCTAAAAACACAATGTTGGTATACTTACTAGCAACATTGATTGATTGGTAATTTATCACAGGAGCACTTCTGCACCATCATGGTATTAGCGTGCTATCTTACTTTGACCCATGTAGCAAAGCCTAGTGCTTAGCTGTGCTAAGAGACCCCATGATTTTATGCACCTTAAGCCCTAAAGTATGCAAGATATTACTCTGCTCCTCCAAAAAAAAgtgcattattatattatatcccccctccccccttacCCCTTTCTCCCAAAGCTTTGATTGTATTACCCTAACAAAAGCACTTCATGTTGTACTTAAATATAATGGATTGGAGCGAGCCCCTATACAGGTGAATTGACAGTTTAAGAGGGGTGTCCCCTGCGCCTAAATAAATCATGACATGTAGAACTGCGTTTAAAGGTAGAGATCTATTTGAGAGACGTCAGAATGTTAACAGAGTGGTTTCAGACAAAGAAgcactttgttttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63883 lncRNA downstream 7184 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 104062 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 104083 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 111567 7500657 ~ 7500920 (-) True G47817
TU63774 lncRNA downstream 170294 7441921 ~ 7442193 (-) True G47759
TU64039 lncRNA upstream 300404 7932949 ~ 7955256 (-) True G47949
TU64046 lncRNA upstream 359324 7991869 ~ 7994732 (-) True G47956
TU64064 lncRNA upstream 414754 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA upstream 415277 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA upstream 415277 8047822 ~ 8050421 (-) False G47972
XM_039799769.1 mRNA downstream 12713 7590901 ~ 7599774 (-) True hsd17b10
XM_039800067.1 mRNA downstream 164638 7439183 ~ 7447849 (-) True LOC120558801
XM_039799689.1 mRNA downstream 204809 7375726 ~ 7407678 (-) True LOC120558624
XM_039800065.1 mRNA downstream 253079 7320025 ~ 7359408 (-) True LOC120558800
XM_039799778.1 mRNA upstream 41917 7674462 ~ 7707260 (-) True LOC120558669
XM_039800375.1 mRNA upstream 145242 7777787 ~ 7844399 (-) False spryd3
XM_039800373.1 mRNA upstream 145242 7777787 ~ 7842800 (-) True spryd3
XM_039800374.1 mRNA upstream 145242 7777787 ~ 7842794 (-) False spryd3
XM_039800376.1 mRNA upstream 148751 7781296 ~ 7842800 (-) False spryd3
TU63850 other downstream 113685 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 125427 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 576112 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 806781 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 890758 6696445 ~ 6721729 (-) True G47624
TU64005 other upstream 139391 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 182606 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 473516 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 2057985 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 2075786 9708331 ~ 9724134 (-) False olfml3a

Expression Profile