RNA id: XM_039799778.1


Basic Information

Item Value
RNA id XM_039799778.1
length 1789
RNA type mRNA
GC content 0.58
exon number 5
gene id LOC120558669
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7674462 ~ 7707260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catcaccatcccAGAAGTTGCTTCAGTCTGCGGTTGGTACCCTACCCTACCCCGAGCTGCTGCTGGATCAGCGTGTAGCCATTGTCAAGCAAGGACACCACGGGAGACACTCACTCACAGCCGAACTGAGCCTCTACCGGACACAGCCGAACTACCGACTACAACCCCGGTTTGAAGTCCTGACCTCAGTGCACCTGGTACggccttttcttctcctctgggCCCAGCTGTCCTCTactcgtcttcttcttcttcttctccttgtGAGCAGACATGCCTCCAGCAGTGGGTGGGCCCGTGGGGTACACTCCTCCTGAAGGTGGCTGGGGCTGGGCGGTTGTAGTGGGGGCCTTCATCTCCATCGGCTTCTCCTACGCCTTCCCCAAATCCATCACGGTGTTCTTCAAAGAGATCGAGGTCATCTTCGATGCCACGCCCAGTCAGGTGTCCTGGATCTCCTCCATCATGCTGGCTGTCATGTATGCTGGAGGTCCAATCAGCAGCATCCTTGTGAACAAATTTGGCAGTCGGCCAATCATCTTACTCGGCGGCTGTCTGTCGGGGTCGGGACTCATCGCGGCCTCCTTCTGCAACACCGTGGAGCAGCTGTACTTCTTCATTGGTGTAGTGGGAGgtTTGGGACTGGCATTCAACTTGAATCCAGCCCTCACTATGATCGGTAAATACTTCTACAAGCGGCGGCCCATCGCCAACGGCATCGCTATGGCGGGCAGCCCCGTGTTTCTGTCCACCCTGGCCCCTCTCAACTCATGGATGTACGATCAGTTTGGCTGGCGAGGCAGCTTCCTCATCCTGGGCGGACTTCTGTTCAACTGCTGCGTGGCCGGCTCCCTCATGCGCCCCATCGGACCCAAGCCGCAGCCGGCCAAGCCCGACTCGGAGGCGGGGGAGGTCAAGGCGGTGGATCCGGTGCAGCCGCAGCCCAAGAGGACCGTCCTGCAGACCATCAACTCCTTCATCGACCTGACGCTCTTCAAACACCGCGGCTTCCTGCTCTACCTGATGGGCAACGTCGTCATGTTCTTCGGCCTCTTTGCGCCGCTCGTCTTCCTCTCCAATTATGCCAAGAGTAAGGACATCAGCAAAGAGAAGGCCGCGTTCCTGCTCTCGGTGCTGGCGTTCGTTGACATGGTTGCCCGGCCCTCCATGGGCATGCTGGCCAACACCAGATGGGTCCGGCCCAGGATTCAGTACTTCTTCGCCACTGCCGTGCTCTACAACGGACTGTGTCACGTGCTGGCGCCGATGTCCGTGGACTACACTGGATTCGTGGTGTACGCCATCTTCTTTGGTTTCGCTTTTGGCTGGCTGAGTGCGGTCTTGTTTGAGACGCTGATGGACCTGGTGGGGGCTCAGAGGTTCTCCTCGGCCGTGGGTCTGGTCACCATAGTGGAGTGTGGGCCGGTGCTGTTGGGCCCACCGCTAACAGGTAGTTTCTATAACTACTACGGCAACTATGACTACACCTACATCTCCTCTGGCATCATCCTCATGGTCGCGGGCGTGATGCTCTTCGTAGGAATGGGCATCAACTACCGCCTGCTGGCGCGAGAGAAGAAAGCCGAGGAGAAGATGGAAAAGGAGGAGGCCAAGGAAGAGCGCGCCGCCATGTTGGCGCCTCCCTCGCCGTCGAAATCCGACGCGGGGAAGGAGGAGAACGACGCGAAGGCCGCCGTCACGCTGGACGACGTCGCCAAGATGGACGAGGACACGGTGtagaaaacgtcaaaaaaaaaaaagcgtggCGCACACCCCCTTCACAGAAACC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K08179 SLC16A1; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63874 lncRNA downstream 50983 7607891 ~ 7623479 (-) True G47837
TU63883 lncRNA downstream 69159 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 166037 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 166058 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 173542 7500657 ~ 7500920 (-) True G47817
TU64039 lncRNA upstream 225689 7932949 ~ 7955256 (-) True G47949
TU64046 lncRNA upstream 284609 7991869 ~ 7994732 (-) True G47956
TU64064 lncRNA upstream 340039 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA upstream 340562 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA upstream 340562 8047822 ~ 8050421 (-) False G47972
XM_039799771.1 mRNA downstream 41917 7612487 ~ 7632545 (-) False fam120c
XM_039799770.1 mRNA downstream 41917 7612487 ~ 7632545 (-) True fam120c
XM_039799769.1 mRNA downstream 74688 7590901 ~ 7599774 (-) True hsd17b10
XM_039800067.1 mRNA downstream 226613 7439183 ~ 7447849 (-) True LOC120558801
XM_039799689.1 mRNA downstream 266784 7375726 ~ 7407678 (-) True LOC120558624
XM_039800375.1 mRNA upstream 70527 7777787 ~ 7844399 (-) False spryd3
XM_039800373.1 mRNA upstream 70527 7777787 ~ 7842800 (-) True spryd3
XM_039800374.1 mRNA upstream 70527 7777787 ~ 7842794 (-) False spryd3
XM_039800376.1 mRNA upstream 74036 7781296 ~ 7842800 (-) False spryd3
XM_039800389.1 mRNA upstream 182567 7889827 ~ 7898293 (-) True LOC120558974
TU63850 other downstream 175660 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 187402 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 638087 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 868756 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 952733 6696445 ~ 6721729 (-) True G47624
TU64005 other upstream 64676 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 107891 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 398801 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 1983270 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 2001071 9708331 ~ 9724134 (-) False olfml3a

Expression Profile