RNA id: XM_039799848.1


Basic Information

Item Value
RNA id XM_039799848.1
length 3675
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC120558698
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13725088 ~ 13739877 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttTGGGAAACATAGGAAGAGGCAGCAAAGGGAACAAACTTTTCTCTCTTGGCTGCTTCCTTTTGGACTTTTTCACATTTCATCAAAGACCTCAGTGTTGACAGAGCGGAAACAAGGGAGGATAATTTGTTTGCTTTACAAGTTAAAGAGTAatttctctgtttttgtgatcagcAGAGgttaatttgttttgttgttctttGCATTTTTATCAAATTATTGCTTCACTGAGCTTTGAAGAAGGTGTAACCACCTGAAATCCCTACAAACTCAgctgcagctctctctctcacacacacaaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatatacacgcACACCTGTTTTTGAGGATTCCCTGGGAGCGCAGTCATGGGCATCTGCGTCACTGTTGCTTGAGGGAATCTGTGCGTCAGTGAGGCTGTTATCTGGTGGTGGTCCCGGTGAATGTTACAGTAGAAGTTGACCTGCCAGTCCAGAGAAGAGGGGGGAGATGTCAACCTACTACCCACGCACCAAGGACCTGACTCGCACCAGGAAGTCAGTGACAGATTCACCACCGTCCTCTCCGTCCCCCACAGACAAAAACTACAGACATGAAAGATTGTCAAGATATGACTCCAGTGGGGAGAGTGTGACAGACAAACCATTGGGCCGCACCAGCTCTTACACTCGGAGAGAGACAAGGCTGGCTGCTCTGAACAGACAGGATCAAGACTCCACTACCAAAGACTATAAGAAGATGTATGCAGAAGCTTTGCATGAGAATGAGAAGCTCAAGTCCAGGTTGCAGGACAGCAAACAGGAACTGGTCAAGATACGTTCCCAGCTGGAGAAAGTCACTCAGAGGCACGACAGAATATCGGAGAGATCTACAGTACTTGAATCAGAGAAAAGGGAAAAACAAGCTCTTGAGAAAAGAGTGTCAAACATGGAAGATGAGTTAAAGGCTTTCCCTGCTCTGGCTCAGGTCCAGACCTTGCGGAGGGTGAACGAGTGTCTCCTGGCTGAGAACAGAGCCATGCTGCGCGTCCTCACCCGCCTCTCTGAGACGGCCTCCATGCCGGAGACAGAGGACCTCTGACACCACCTGTCCTCctttctccccctcctctcccttcCTCAGCCACATAACTTCTACTCTCCCCTCTACTTCTGGTGCCTCTACAGCCCCCCTCGTCCTCTGCTGTTTTCCTCTCAGATCTTAACAGAGCTCAAGTCAGACAACCAGAGGCTTAAGGATGAGAATGGGGCTCTCATCAGAGTCATCAGCAAACTGTCCAAATGAAAAGATGTCTGAAGCTCCTGTTCTGTGTCTGTGGATGCTCCAACCCTGTTATTTTGGCagtttaaatatccacaatgtcCCAAGTTGTGACTCCTCTGAGTTAGGTGATGGCTGCTTTGCACAAATAAATTCCTGTTGGGACTTGTGACGATCCAAAGAGAAGTGTTAAGGAGTTTCAGTCAAATTTCACTGTGTGATGATCGAGTTACAAACATTGTTTCTACGTGATTAGTAATCATAATTTTGTAATATCCAGTGATGTACATTAATAAAATAGGGACCAGCTGTACTGTTTGATAACCTTAAAAAGCCCAGTTTGAACAAATCCAGAGGTTTGCATGAAGGTACTGTTTCTAATAATATAACCACACATCATATGGAGACATCACGTTTGTTTGCTACATCACGCACCGCAGAAAAGTATAATAATGTTGTCTTGATTGTGAAAAAAGAGCAAAGTCAAGGGCCCCAACGGCCATTTTGGCAtggagatatactgtattttaaaaaaactttgTCATTTCAATCAGAATATATGACCACACGGGTAAAATAAGGCCCAGCCAAGCGACAAACAGGTGCTCTGGTTCCAGAAGCAAAAACTAGATATTAATATAAATCCACCAAGGCATCTGAGTAGCAACAACCATTGAAGCCAGCTCAGTAGTTCTTCTAATGGCAAGTAGATGTTCCAGACCAAGAATGTATTGAAATGAAGGAGAAAATGCTTTTGATGATTTGTTTTATACAAGAtcatatataaaacaaataattgtGAACATTTTTACTCTAGTATAAAGACATTCATGCTTAATAAGACACATTGTTTAGGTTTGTGTTTTAGATCAGTTTCTAATTCCAACTGgttagataatttttttgtgaCAGTGAAATCTCTTATCATTTCAAAAATTCCATTTTTGTTAACCTAGCGTATGATAATGTCCCCACTGTATTTGGTATTTGAAGGGGGCTGTATGCTAGCCCTGAATAATGGATATAATGCACTTTGAGGCATCACAGCACTGTATTATCTTCAGACTGGTTTCAGTTTCCATGATAACATAATTCAGTGTTTGCCAGATTCTGTTCATCAGTTCTATGTGTGGTTTTAGTCGCCATTCTTCATTTTTTTACAGAGAATTTTTTATTCAATGGCTCAGCTTCAAAACAGCAGAATGGCTACACAGAGGAGacagtctgagtgtgtgtgtaaaagaaagtGTCCTATGTTCTGTAATAgagatatatttatttattgatgcaCTTTCTTAGTTCTAATTTTCATGCTTTGTTTACTCAATTTTCTTTCAAAGAAAACACTAAACTGTTTTGGTTGACATCTTGGCCATCTTTCTGTTAAGTGATGAAAAAACGCAAATGCCAAAATCTTGGTAGATGTGCCGTAAATCACTGCTGACATTTTAGCCTCCACAATATTgtgtgattaataataataaatgaatctCCACAATCCAACTTTGGAGGAACTGTTGCTTGCACTTTTCATTATATGTTGTGTAGATTACATATATTTTAaactttgttgtgtgtgttgatatTGTCACGATAAATTATGTTTAATTAATTGTTGCCTAACTACACTGAGTTGCCAGTTTATGAAGTACACCTACCTGGGTACATCTAGTGCAATCCAATACTACAACCCTGCAATAAATTCCAAATTTCTTGTGTTCTGGTCATCTGGTTATGGAGGACGAATTTACTGATGTTACTCCATTGCGTTGCATTATACTAAAATGTGCTTCAATATTTGGGTTCCACAAAgtgtgtgacttttttttttgaatgttACCTAGATGGTCTACTTAACATgagaaatacaaatacaactaGAAAGAGGCTGCTGCCTTGTAGTGGTTTTTAATGTGGCTTATGGGGTGCCATCACCTTATATATTCCGAAAAGAGTGAAGGTAGAAAAATGTCATCTTATCATATTTAATGTATGATACTGCCAGACTCCGCTTGCATTTAATATCCTTTAGCTGTAGAGTTGCTACAAGTGATGAATGGTGTGCCGGAGACAAAAACGGTTTTGGTATCTGTCTTCTGTTCACTTTAATGGATGAGTTGACCAAAATCCCCAGGGTCTGATGTATTCCTCTAACAATACGATGGTTTTAGAGTCCAGTGTTATATTTGGTCACATCCAGTACTCGTGTACTCAAAACTACAAATAAGATACAGCTATTTCTACACACGCTGTACCTTTATTGAACTATGCAGTTGAACTATGTATTGAAAATGTTTGTAATGTGTTGATAGCTTAATATACGCACATTGGTTTACTCACTTTGCTTAATAAACTGTAAAGGAATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66283 lncRNA downstream 67712 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA downstream 67712 13655531 ~ 13657376 (-) True G49624
TU66135 lncRNA downstream 291993 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 317645 13406851 ~ 13407443 (-) False LOC120558461
XR_005639128.1 lncRNA downstream 346225 13376627 ~ 13378863 (-) True LOC120558464
TU66299 lncRNA upstream 7542 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 299858 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 379104 14118981 ~ 14125759 (-) True smim29
TU66368 lncRNA upstream 440463 14180340 ~ 14184391 (-) True G49673
TU66371 lncRNA upstream 465712 14205589 ~ 14205824 (-) True G49675
XM_039800921.1 mRNA downstream 82655 13637063 ~ 13642433 (-) True LOC120559297
XM_039800922.1 mRNA downstream 82935 13637063 ~ 13642153 (-) False LOC120559297
XM_039801592.1 mRNA downstream 91453 13616876 ~ 13633635 (-) False LOC120559678
XM_039801591.1 mRNA downstream 91453 13616876 ~ 13633635 (-) True LOC120559678
XM_039801321.1 mRNA downstream 109042 13609317 ~ 13616046 (-) True mdfic2
XM_039800422.1 mRNA upstream 3312 13743189 ~ 13746688 (-) True LOC120558999
XM_039799853.1 mRNA upstream 7526 13747403 ~ 13753866 (-) False zgc:66479
XM_039799852.1 mRNA upstream 7526 13747403 ~ 13753865 (-) True zgc:66479
XM_039799854.1 mRNA upstream 7526 13747403 ~ 13753862 (-) False zgc:66479
XM_039799855.1 mRNA upstream 15052 13754929 ~ 13779091 (-) True LOC120558701
TU66001 other downstream 471616 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1286363 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1333417 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1502086 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1555879 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 400503 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 792247 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1105461 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1105461 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2541167 16281044 ~ 16283856 (-) True G50217

Expression Profile