RNA id: XM_039799855.1


Basic Information

Item Value
RNA id XM_039799855.1
length 5002
RNA type mRNA
GC content 0.46
exon number 27
gene id LOC120558701
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13754929 ~ 13779091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCCGCTTTGAGCATCCATCTGCCTAAACAGAAGAAGCCTCTCCTTGACAGTCACTGTCTAGGCACAAGCTTGCAGGCAGCAAAATCAAATGTATTTTCCCAAAGGATTTAATATCCAGTAAACCCCAGGAGGCAGCAAGTTTATACCATCTATAAACCAGTCTCAGAATCTCAGTGGGAGTGAGGACAGAGCTGTAGACAGGTCAGACGTTTGACAGTATGTGGAAAAGGACGAAGAACACAGGTCCCACTACCAACAGACGATGTTTCTCCCTCGTTCATCAATACATTCAGCGTTTTAATGAGGTGTCTGGCAACAAGTCAGCTGTGATCCGGAGAAGATCTAAGACTCCTGGAGTAATGATCACGCAGTATATAGTAGACATACCAGAGGGAAAAAGCACCCCAGATGTCCAGAGTAAACCCATCCCAGTTACTATCAAGGAAGGAAAATCAGCTGTTTTCAAGATTGTGGTGAAAGGGGATCCAAAACCAGAGGTGTCATGGAGAAGAACTAAAGGGCCTATTTCAGATAAGGACAAATTTCTGAGTAAATATGATGAATCGACTGGAGAGCACATATTAGAGatTATCAAAGTGACTGGTGCTGAAACAGATACATACAAATGCTACGCTGCCAACGAGTATGGCAAAGCTGTCTGCACAACAACATTAAATGTGATTGAGGCTTCAAAGAATCCATCAGACTTCAGAAAATTGCTGCGAAGAAGTAAAGTAGAGGAAAAAGCAGAAGGGGAAACCGATGAAAGATTCTGGGACGCGATGCTGGACGCTGACAGGAAAGACTATGAGCGCATCTGTACGGAGTTTGGTGTTGCAGACTTACATTTGATTCTCAAGAAActggaagagaagaaaaagaagagggtGCAAAACAAGTGTAAGGATGGTGCGATTCCTTATGATAAGGAGGCAACAGAGAAACCCAGCATTAAGAGCGCTGGAAGGACAAATGATTTTAATATTAAGGGCCTGATGCAAAAGGGCAACGGGCTCGAACGGGTGGATGGAAAGGTCAACCTCCTCGACACCGAGCTGAATCTGGTGGATGAAGACGTCACCCTTCTCTCTACCGAGTTTAAACTTTCCAATGTGGACTTTGTTATTAAAATTGAGGATCTTAAAGCTCCAGAAAGAGACGATGCCCTCTTTGCGTGTGTCCTGACTCACCCACTACCCAAGATCACATGGATGGGCAAGGGCAGCGCCCTGGAGGATGGAGAGAAATACAGCATAACCGTGTCAGACCACAAACTGATCCACCGGCTGCTGATCAGGGACTGCAACCAGCTGGACCAAGGCATCTATTCAGCGGTGGCTGGCATTACATCCTGCAGTGCCTGGCTGGTTGTTCAAGCTGAAAGTGAGCCTGCATCTGCTGGACAGAAGAGAGATCATAAAACTGCCTTTGCTAGTGGAGCACACATCGATCTTGAGAAGGTGGCCAGAgagcaacaaataaaaaaccGAGAGGAGATGGAGAAGATTTTTGCAGCCGTAAAAGCAAAGCACGGAGAAGGACAACTGAAGGAAGGAAAGTCATTGACCACAAGTGAAAGAGATGGTGATGGTGTAATAAGTGCAGTCACTGGACCGGGTAAATACAGCGGAGCAGTAAAGGACAAGCCTAATGCTGCGAAAACCAGTGCCCTGTCTGAGCAAACAGGAAGCAAAGGGAAAGCAAAGATCAAAAACTCAAAAGGCAACGGCCCAGAATCAAAATTAGATGCTTCAAGGTGTGTAACACAAGCAGGAGCGCAACTGATATTAGATGACCCCAAGAACAAGAAACGCACCAGATCAGGTCAAAGGGATTTTGACAAGGTAACAGATACCAATGGAGGAGGATATTCTGAAGGAGGATATTCTGAAGGAGGATATTCTGAAGGAGGATATTCTGAAGAGAATGAGGACTTCACTGGATCTACCAATAATTTAAGATACATAAAACATGGTCAAGAGACAGAACATGAACAAATTGAGTCCAGCGGCAAAAGTATTGATGTAGAGTTCAACCAGATTCAAACATTCGCCACAAGTCAAAATGAAGTGGCTGATTCTTATGGAAATAAAGACTCTACTGGGTCCATCACACATCAAAGGCGCACAATGAAGGTCCAATGGAAACAACATGCATCTGAGCAAGATCCAAATGGACGAGCAAGTGACAATGAAGGAAGTGAGGATGCAGCAAGTGACAGTGATGAGAATGAGGACTCTACCGGCCAGGTCAAGCATTCAAGTTGTTCAAAGCAAAGCCAGCAGCCACAGAAAACAGTCAACGgtgaaagTACAGGTCCTGAAAACCACAGTAAGGGTGACGAGACTGAAGACGCAACTGGCACTGCCACACATTCAAGGCGTAAAAGACAAGGCCCAATAATAGAAGATGTGGTGATTGATCCTGGGGTTCATTTCATCTGTGGTTTGTCTGATGTCAACGCTTTCATCAATGAGACTGCTGAGTTAACATGTAAGCTCAGCAGTGAAGACTGTGAGGGAGCCTGGTTCAGAGACGGCAAAAAGATATTCCCAGATGACACTTTCAGTGTCACTAAAGATGGTGCGATCCATAAATTAGTCATAACCAGGTGCGAGGAAGAGCACTCTGGGAAATACCGCTTTGAGGTAGATGGACGTAAAACAGAAGCGATGATCAACGTCCAAGATCCCCCAAGGTTTAACCCTGAAGACCTGAGTGCTTTCACTGAGCCAGTGACAGTTAAAGTGGGGCACAACGCCATCTTCAAACTCCATTTTGTAGGCCATGAACCCATAAAGATTAAGTGgtacagagagggagaagagctCCTGGAAGACAACAATACAAAGATAGAGAAATCTGCAAGTCACAGCCGCTTGCTCCTGAGCAGATGCCAGAGGAAGGACACTGGAGAGATCAAGATTAGGCTCAAGAACGAACATGGCTGCATTGAGGCAATTTCACAGCTAATTGTGCTTGacAAACCCACTTCACCCCTGGGTCCTGTAGAGCTAACTGAGAGCTCAGCTGTATGTATTGAATTTAGGTGGAGGCCTCCAAAGGATGATGGAGGCTCACCTGTGATTAACTATATTATGGAGCGACAGCAGGTGGGACGAAACACCTGGAAGAAAATAGGGGAAATCCCAGCTGTGTCCAGCTACCGCGATACAGATGTGGACCGTGGCCGGAAATATTGGTACCGTATCCGCGCAGTGACTGCCGAGGGTACGAGTGAAGTGATGGAGACTGATGATATGCAAGCCGGCACACTAGCTTTTCCTGGCCCGCCAGCACCTCCAAAGGTGGTCAGCGCCTATGACGAATGCATCAACATTTCCTGGGCTTTACCAAGTAACACAGGAGGTTCACGTATCCTGGGCTAtattttggagaaacgcaagaAGGGGAGTAATCTCTGGACCGTTGTCAATGccatggatgaaataataaaaGAGAAGAATTATGCAGTAAAAGATGTTGTGGCAGGAATGGAATATGAATTCAGAGTCACTGCCATAAACCTTTCTGGAGTTGGTGAATTCAGCAACCCCTCAGAGTTTGTATTTGCACGGGATCCAAAGAAGCCACCTGGGAAAGTTACAAGCCTAAAGGTGACAGAAACGTCTTACAGCCACTTGGTCCTGACTTGGACCAAACCTGAGGTTAAACCAGGCATACAGGATGAAGCAAAGGGATATTATGTTGACATTCGGCCTGCAGAGTGCACTGAATGGTCCCGCTGTAACAGCACTCTCATCATCACGACTTCCTTCACTGTGAAAGGCCTTAAGTCCATGGACATGTACTGGGTGAGAGTGATAGCGACTAATGATGGAGGGGAGAGTGCTCCCGAGGAGCTGGCCAACTATGTCCTCGCGATGCCCTCACCTGTGAGGCCAAAGTTTACAAACCACAAGATGAAGAGCTTCATGGTGGTGAGGGCAGGAAACTCTGTCAGGATCACAGTGAACTTTGAGgCTTCCCCACGGCCATATATTATGTGGCTAAAGGACAATGGGCCAGTGACAAAGCGAATTACCATCAGTAACTCTGATGGCTCATCCCAGCTGCTAATCCCCTCCTCTGAGCGCTCTGATACTGGCATCTACTCCATTATGGTGAAAAATCTAGCAGGGCAGGAAACATTTAGTACAGAGGTCAGGGTCACAgATGATCCAAAGCCTCCTGGACCAGTAGAACTGGAGGAAAATGTGCCAGGCACAGTTACAGTGATCTGGGAACCTTCCCCTGATGAGAAGCGCGATGACCGCCTCCACTACGCAGTGTCCAAACTGGACTCTACCAAACGCACATGGACCACAGTGGCTGACAGACTCTTTAATAACAAGATCACAGTGTGCAATATCATGCACGGGAGGGAATATCTTTTCCGGGTGTATGCCAAAAACGACATGGGCATTTCTGCACCGTCAGAGTCACCAACCTATGGGACGGAGAAGAAGaaagGAAAATTTGTGGTGAGCGTACCGACCAGAAAGGACTGTGATTTGCGATGTGCGCCAACCTTCATGGTACCTTTGAAGCTTCACACTGCACCCAAAGGCTATGAATGCTATATGAGCTGTGCAGTGAAAGGGAATCCGAAACCTCGCATCACGTGGTATCGAAATCACATCAGCCTAAACACCAATACCAACTATTACATCTCTGACACCTGTGGAGTTTGCTCCATGTTAATTCTCCGCGTAGGCCCCAAAGACATGGGGGAGTATACCATCACTGCAGAGAACGCCCTCGGACGGGCTGAGTGCTCCACCGTCCTCAGTGTCCGAgAGTGAAGACACAAGGCACCACAATATGAGCagtatttattttaagatttaGATCTAATACATACATGATGTTTGATGTTGAAGTGGTTTTGCTGCTTGGATGTAATGCACCAGTtgcaataagaaaaatatttaatattgtattaatTGGATCGCTAATACAAATAAAGTCTGTCTCAAATAAAACATTGCTTTGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66299 lncRNA downstream 6470 13747419 ~ 13748459 (-) False zgc:66479
TU66283 lncRNA downstream 97553 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA downstream 97553 13655531 ~ 13657376 (-) True G49624
TU66135 lncRNA downstream 321834 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 347486 13406851 ~ 13407443 (-) False LOC120558461
TU66319 lncRNA upstream 260644 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA upstream 339890 14118981 ~ 14125759 (-) True smim29
TU66368 lncRNA upstream 401249 14180340 ~ 14184391 (-) True G49673
TU66371 lncRNA upstream 426498 14205589 ~ 14205824 (-) True G49675
TU66372 lncRNA upstream 429481 14208572 ~ 14208852 (-) True G49676
XM_039799853.1 mRNA downstream 1063 13747403 ~ 13753866 (-) False zgc:66479
XM_039799852.1 mRNA downstream 1064 13747403 ~ 13753865 (-) True zgc:66479
XM_039799854.1 mRNA downstream 1067 13747403 ~ 13753862 (-) False zgc:66479
XM_039800422.1 mRNA downstream 8241 13743189 ~ 13746688 (-) True LOC120558999
XM_039799848.1 mRNA downstream 15052 13725088 ~ 13739877 (-) True LOC120558698
XM_039799856.1 mRNA upstream 71355 13850446 ~ 14082805 (-) False LOC120558702
XM_039799857.1 mRNA upstream 71355 13850446 ~ 14082805 (-) True LOC120558702
XM_039799859.1 mRNA upstream 341955 14121046 ~ 14125823 (-) False smim29
XM_039799861.1 mRNA upstream 341955 14121046 ~ 14125662 (-) False smim29
XM_039799860.1 mRNA upstream 341955 14121046 ~ 14125659 (-) False smim29
TU66001 other downstream 501457 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1316204 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1363258 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1531927 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1585720 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 361289 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 753033 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1066247 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1066247 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2501953 16281044 ~ 16283856 (-) True G50217

Expression Profile