RNA id: XM_039799869.1


Basic Information

Item Value
RNA id XM_039799869.1
length 1820
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120558709
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14185309 ~ 14193336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGGTGTGTCGATAGTTGGAGTGGACAGAAGTGATCCAGCTGTGAGAGACACATACAGCACATCCTCGCCTGAAGGCAAAACAGATGACTTTAGTCCACACTTAGACAGAGGAACAGTGGAAACTCTATACTGAATCCAACACTGACAAGTGTTAAACAAACATGAGCATGGGGAGTCCAGGCTGTGAACACACGGGCTGCACTGCACCTCTACACTCACCTCTCTACATCAGCCACACCCCCACTGACACGATGGCCTGGCTGGACGAGGCGGACGACATCAAACCCCCTCGCAGCTTGTTGGGGCTGCCTGAGCTCAGCTGGCCGGGGGTCTACCTCCCCTGCTACGACAGATTAGCCCTAGAGGAGAGCCCCTGGGTGCTGAGGATGACAGAGGCCCCAGCTCCAGCTGCTCCTCCCTCCAGCACTCCGGAGCCAAACCAAGCCAAGCCCAGCCAACCCCAGGACCCCCCCTCTGGGACGGAGGGTCAGGTGGAGGAGCGCTGTCTGGAGCAGGTCCAGACCATGGTGGTGGGAGAGGTGCTGAAGGATGTCGACACAGCTTGCAAACTGCTGAACATTGCACCAGACCCCTTGGACTGGAGCTGTGTGCACGTTCAGAAGTGGCTCCTCTGGACCGAGCACCTGCACAAGCTGCCGCAGGTCAGCATGATGTTTCAGGAGCTGAGCGGGAAGGATCTGTGCTCCATGACAGAAGCAGACTTCAGACAACGCTCCTCACAGTTTGGAGACATGCTGTATGCTCATCTGGACATCTGGAGATCTGCTGCAGCAATGAAGGAGCGCTGCCCACCAGAGGACAGCAAATCTGTAGCTGATGATAATTCCTGGCCAGATGTGATGCGTAACTACCCCAGCCAGCCCATCCACCTGTGGCAGTTCCTCCGAGACCTGCTCCTCAAGCCTCACAACTACAGCCGCTGCATCCGCTGGCTCAACAAAGAGAAAGGGATTTTCAAAATAGAAGACTCAGCTCTCGTGGCCAGGCTATGGGGCATGAGGAAGAACCGCCCGGCTATGAACTATGACAAACTGAGTCGCTCCATACGACAGTACTACAAGAAAGGCATCATTCGAAAGCCTGATGTATCACGCAGACTGGTCTACCAGTTCGTCAACCCCGTTTGATAAAGAGGCTCGGCTGATCCGAAAGAGAATGAGCTGAGGAGTAACCAAAGATATGCTGGACATACAGTAGGAGTAACATGAACTCTGAAGCTCGTTCATTCATTGTACTTGATGTTTCTTTTCAATTGTAAAGACTGCCTACTGAACTATGCACTCCTGCCTATCATAACATCGCTCTACTTTATTATTCTtaatagtgattttattttgtctttatcACTcgtttgaaatgtatttttttggtGTGATGTTTGGTTTCTAAAAAGGACACACATTTCTTCAAACTATGGAACATTTCAAAGAAAtaatgcttatttgctttcttgcagagttagatgaggagattgataccactctcatatccgTACAGTACATATGTAGCTGGAGCCAGCagttggttagcttagcttagcttgaagactggaaacagctgccGGTATACTGAATATTGTTTCTGTGGGGAGCTTTAGGGGTGCTGGTATGTGAGTTTTGATACCTTTGGAGTGAgcaaggctagctgtttccactctttgtgctaagctaagctaaccagcggtTGGCTCAagctacacatttaacataCAGCACATGTGAGTGGTaacaatcttctcatctaagtcTTGGCGAGAAGCAAACGCCTATTTCCCCCAAAATTTCAAACCAGtccttt

Function

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66368 lncRNA downstream 918 14180340 ~ 14184391 (-) True G49673
TU66319 lncRNA downstream 59550 14039735 ~ 14125759 (-) False smim29
TU66318 lncRNA downstream 59550 14118981 ~ 14125759 (-) True smim29
TU66299 lncRNA downstream 436850 13747419 ~ 13748459 (-) False zgc:66479
TU66283 lncRNA downstream 527933 13655531 ~ 13657376 (-) False G49624
TU66371 lncRNA upstream 12253 14205589 ~ 14205824 (-) True G49675
TU66372 lncRNA upstream 15236 14208572 ~ 14208852 (-) True G49676
TU66373 lncRNA upstream 18874 14212210 ~ 14212497 (-) True G49677
TU66374 lncRNA upstream 23684 14217020 ~ 14217510 (-) True G49678
TU66375 lncRNA upstream 24311 14217647 ~ 14218807 (-) True G49679
XM_039799871.1 mRNA downstream 42815 14140380 ~ 14142494 (-) True LOC120558710
XM_039799859.1 mRNA downstream 59486 14121046 ~ 14125823 (-) False smim29
XM_039801596.1 mRNA upstream 2146 14195482 ~ 14203960 (-) True LOC120559681
XM_039801595.1 mRNA upstream 6123 14199459 ~ 14203960 (-) False LOC120559681
XM_039800933.1 mRNA upstream 35034 14228370 ~ 14230406 (-) True taf11
XM_039801022.1 mRNA upstream 210682 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039799588.1 mRNA upstream 223000 14416336 ~ 14432994 (-) False LOC120558545
XR_005639168.1 other downstream 40087 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 931837 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1746584 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1793638 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1962307 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 338788 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 652002 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 652002 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2087708 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3494779 17688115 ~ 17689760 (-) True G50712

Expression Profile