RNA id: XM_039799879.1


Basic Information

Item Value
RNA id XM_039799879.1
length 1893
RNA type mRNA
GC content 0.47
exon number 8
gene id mbd4
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16426070 ~ 16429565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCAGACTCCGATCTGCTCGCTACTTCCTGCATGCAGGAGGCGGCGAGCCTCCTATGTTGACATCAGAAAATATCCTGCAAGACAACACGAGCACCCATGAGCTCCTGTAACAAAAAGAAAGAGTTAGAGGTAAAGACGATTCAGGAATGGCTGCAGATGTTGGTTGTAAAACGTCCGCAGCTGGACATTGAGCTGAAGGCAGTGAGTGAGCTTCAACAGTGACTCCACCACGAACCTACCACTCTCTCAACCGggttcaacaacaacaacaacaacaacaacaacacacctgtCAAAATGCACACTAGCTGTGATAGCCACCAAAGTTACAAGGACATGGGTGACTCATGCCACACCTCCACATTGCCCCTTGGCTGGATCAGAGAGGTTAGGCAGCGGAAAGAAGGGAAGACAGCAGGCAAAATGGACATCTACATTACAAGTCCCCAAGGGCAGAAGTTCCGCTCAAGAGCATCCCTGCATGCTTTCCTCCTAAAAGATGGAGAAGGGAACTTAGACATAAACCTCTTTGATTTCACCACATCCAAGGACAATGTTGTCACCACTTCACAATTACTCCCCTCCCAAGTAAaacagaggagaagaaagaaaagacatgCAGATGGACAGCAGATGACAACAGAAGATGCAACACCTCCAAATAAATCTAAAAGAGCCCCTTCCTCCCTCAGAAGTGAAACTAAAGACAGAAAAGTAAAGAGTGCAACTGTGAAGTGTTGCATACAAGCTGCACCTACATCCACAGAGGATGATGTCAAACTGCAGAAGAGCCCTCAGAGTCTGAGAGAGAAGCTACTCCGACTGGCTCCTTCCAGTAACCAACAAAACACTCTCATTGTTCACAAGGACGAAGAGGCAGACTCGCAGCCTTCTGTCCCGACTCTGAATGTTGAGCCTGCCACTGAGAGTGAGAGCGAGAACGAGGGTGAGGATGAACGAGGCGGAGATGAGATACAGATTCACAGCAAAGGTGACAACAAGTCTAATTCTGAACTGGAGGCCGTCGCTGAAAGTCACCGGGATGAGGAAGGCGAGGTGTTGTTACCTGACATCACTGGTGGGGGCTGCACACCAGTGAGAGATTCCCAGAATGATGATCTACGCTGTCTGACAGCTTATAAAAGTAGCAGTTCAAAGTCCAAGAGTGTGGAAGACAAGCGAAAAACAAGCCCTTATTTCAGCAGGAAACCAAACAGAGATGGCCTTAGCCCACCCAGAAGGAAGGCCTTCAAGAAGTGGACACCCCCTCGCTCACCCTACAACCTCGTACAGGAAACCCTTTTCCACGACCCTTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGCAAGATGGCCATACCAGTACTGTGGCAGTTCTTTGAACGTTACCCGTCTGCAGAGGTGACCCGCGAGGCCGACTGGAAGCCCCTATCTGAACTTATGAAGCCACTAGGCCTGTATGAGCTTAGAGCCAAAACACTCACTCGATTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGTTGCATGGTATTGGGAAGTACGGCAACGACTCCTATAGGATCTTCTGTGTGGGCGAGTGGAGAGATGTGAAACCTGAAgatcacatgttaaacaaataccACGCCTGGCTGTGGGAGAACCATGAAACATTTGGAATCTGAAACACGTAATATGAGGAACTGCAAGGAAGATTTGATGTGGTGCAGACAAGAAAATGATCACATAAACAATACACATAACAATATCAGTATTATGATGTACACGCAATGTTAAACCTGGATACCTTTCAAATTATGCAGTTATATTACTTCttcctttttaaattttttttacttaatgtGTAATAAAATGTTTGGTTTAAAAGTT

Function

GO: NA

KEGG:

id description
K10801 MBD4; methyl-CpG-binding domain protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67178 lncRNA downstream 7457 16416921 ~ 16418613 (-) True G50278
TU67119 lncRNA downstream 46447 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA downstream 46447 16373144 ~ 16379623 (-) True G50230
TU66980 lncRNA downstream 469398 15952530 ~ 15956672 (-) True G50143
TU66991 lncRNA downstream 492772 15930121 ~ 15933298 (-) True G50153
TU67316 lncRNA upstream 150512 16580076 ~ 16580982 (-) True G50371
TU67324 lncRNA upstream 231434 16660998 ~ 16663045 (-) True G50378
TU67328 lncRNA upstream 236486 16666050 ~ 16679676 (-) True G50382
TU67335 lncRNA upstream 284497 16714061 ~ 16714748 (-) True G50389
TU67417 lncRNA upstream 515207 16944771 ~ 16944972 (-) True G50443
XM_039799887.1 mRNA downstream 123 16424220 ~ 16425947 (-) False LOC120558718
XM_039799888.1 mRNA downstream 123 16424220 ~ 16425947 (-) False LOC120558718
XM_039799886.1 mRNA downstream 123 16424220 ~ 16425947 (-) True LOC120558718
XM_039801416.1 mRNA downstream 253038 16166305 ~ 16173032 (-) False ptpdc1b
XM_039799872.1 mRNA upstream 30686 16460250 ~ 16526652 (-) True plxnd1
XM_039799897.1 mRNA upstream 98954 16528518 ~ 16577086 (-) False tmcc1a
XM_039799895.1 mRNA upstream 98954 16528518 ~ 16576919 (-) False tmcc1a
XM_039799894.1 mRNA upstream 98954 16528518 ~ 16576919 (-) False tmcc1a
XM_039799893.1 mRNA upstream 98954 16528518 ~ 16576919 (-) False tmcc1a
TU67071 other downstream 142214 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1572253 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1572253 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1891465 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2280848 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 1258551 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1409980 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2450801 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3270209 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 3271766 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile