RNA id: XM_039799895.1


Basic Information

Item Value
RNA id XM_039799895.1
length 4021
RNA type mRNA
GC content 0.49
exon number 8
gene id tmcc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16528518 ~ 16577086 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACGTCCTACGCCATGACGTCAGAACTGAGAGCGGACGAGCGGACCGTGGGGCGGACGGTACTCGGAGGAGGGGTGCTGCTCGCTCAACGTCTGTGTCAGCTCCAACAGTTTGCTATCACCCGTACCTGTGGGCCTGATGAAGTAGCAGGTTGTTATCTCCTCTGCAATGAAGGAAATCCACTACATCATTGTGAATATGGACTGAAGGTAATCCACAAGAGTGAGTCACGCTGGGCCGACAGTTGGGCTGATGCTGGCCAGGGCTCAGGCGCTGTGGGCATGATGAGGCGTGGGACCAGCCTGCAGAGCCGTCGCAGTAAAGGATCCGGGTCGGGATCTGCGAGCGGAGACCACGATCCTCTCCTGAGAGGTAGCCCCCAGGCCCCGCACCGCCGCCACACCCACGATCCACAGCAGCACATCAGACGTCCACGCTCCTCTTCCCCCGCTGAAACCACACCCAGCAGCCCCACACCTGGATGCACTGGGGGTGATGTGGTGCTGTCATCAGGGTACCACTCCACCGAGGAGACGGACAGGATTGACCGGCTGGAGGTGAGCGGGCTGGGACAAACACCCCTGGCTGTTTCATGTGGTGCAGACGGTTCATTCCCTGGAGGTGAGGATGGCACCCCAGACCCTCAGCGCACAAAGCAGGCAATCGCCCAGCTGCAACAGAAAATCCTTAAACTCACAGAGCAAATTAAGATCGAGCAGACAGCCAGGGATGACAACGTTGCAGAGTACCTCAAACTAGCCAACAATGCTGACAAACAGCAAAGCACACGCATCAAACAGGTTTTTGAGAAAAAGAACCAGAAGTCGGCGCAGACCATCCAGCAGCTGCAAAGGAAACTCGAGCACTACCACCGGAAGCTGCGGGAAGTGGAGCATAACGGTATCCCACGCCAGCCCAAGGATGTTCTGCGGGACATGCAGCAGGGCCTGAAGGATGTCGGAGCCAAAGTCACAGGCTTCAGTGAAGGCGTGGTGGACAGCGTGAAGGGaggcctctccagcttctcccagGCCACCCACTCTGCTGCCGGGGCCGTCGTCTCCAAACCTCGTGAGATTGCATCGCTGATTCGCAACAAATTCGGCAGCGCTGATAACATCCCCTCTCTTAAAGACTCTCTTGACGACCCCTCAGTGGAAGAAGGTGTGACAGGGGCTGGTGGACGTTCACTGGGCAGCGTTGGGCATCACCTCCAGCCCAGTCCCAGGTATGGTAGTGAGGATGACTGCTCTAGTGCTACATCAGGCTCAGCGGGGGCCAACAGCACCACAGGTGCCCCCGGAGGTCCCCCAAGTTCAAAGGGCAACACACTGGAGAGGAGTCAGAGTTCCAGCCTGGACATGCTGCTGCAGGAGATGCAGGAGCTAAGGGAGGGCCAGGCAAGGCTAGAGGAGAACCTTGATGGTTTGAAGAGCCACTATCAGAGAGACTACACAGTTGTTATGCAAGCACTGCAAGAGGAACGCTTCAGGTGTGAACGTCTGGAGGAGCAGCTGAACGACCTGACAGAACTTCACCAGAATGAGATCCTTAACCTCAAACAGGAGCTGGCCAGCATGGAGGAGAAGATCGCCTACCAGTCCTATGAGAGAGCCAGAGACATACAGGAAGCATTGGAGGCGTGTCAGACCAGGATCTCTAAGATGGagctccagcagcagcaacagcaggtCGTCCAGTTGGAGGGGCTGGAAAATGCCACTGCCCGGACCCTCCTGGGTAAACTTATCAATGTGCTGCTGGCCCTTATGGCTGTCCTTCTGGTCTTTGTCTCAACTGTGGCCAACTGTGTGGTCCCGCTGATGAAGACGCGCTTGCGCACGCTCtccaccctcctcctcatcctcttgCTGGCTTTCTTGTGGAGAAACTGGGACGCTCTCTCGGGGTACACGCACCGTGCTCTGCAGCCTCCAGGATGACCAGATTGAAGCCAGCACATGTTGCTTTGGTGACACCAGGTGATGTAACTTTAGCTGCAATCATGCAGGAAGTTTGAAGAACGGGATTGCCGTTAGAATGGCTGCGTGGCCACGCACGGAAAATACGGCCGAGCACGTACGCACATGGAATCAAGAAAATGTGGAAGAAACGGAGTAAAACTTGAGAACACTCATGATTATTTAGGAAAGAAGGAAgactgtttacatttttaaaaatgaactATTGTGTTGCTGTCTCTCAGAATGCAGCATTGtactgtttttatcttttaGAGTTTAATCAATTACAATGTTATTATTtctaataatattattatttttttcaatgttattTTATTCAGTACCATGTAGCATTACGCTCTTCTCACTCTACAGGACGGGGAGGTTAGTCAGGAAATTGGGTTGGCGATTTGCTCCAAAGGCCCAGTCCAATTGTTGAGACATGGCAGTGTGATAATGTGGTTGATTGCCTTTAGGAAAAGAACTTTTACCTAGCTGTGATTGGTAGATTTGAACCAACGAGTACATTTACAACATGTATTTGAACTTGGATCAAAACCTTCCTGGGAGTTTCTTGCTGTGATAGAATTTGTTCATACAGAACATTTTGAAGGACTGACCCATGACCTTTGAGTGTCAGATGActaaaaaattgttttgtgcTTCCTTACCATTTCTAATAGCAAAGATCACATGCTTTTACTTATTTCCTTTTTTACGTAAAACAAGAACTGTGTTTAATAGGGGGGATTATAActgaaacacaaagacagaatggGCCAGCTTGAGAAGGAAAAGCTACAATGCGCTACTCACCATAGAAACGGCACATAAACGCACAGAGAACATCTGGTTATTGTTAAAGCATCTAGCCATACTTGCAACATGTAAACAATGCTGCATGTTTTCATTAAGAAACAATACATGGGAGCcagttttgtgttttaaaagCAATGACACAAAGCCATGGTCCAAGTAAAATCAATTTGCCAGGATAATTCTCTCCCCTACCGCCATATTTGATGTGATCAGGTCAGGAAAGAGAGACCACTGGTGCTTATCCAGCTCCATCTCAGTTGGAACAGGAATGCTGCTgctttatatatacagtgcaaGTCGTCTCCACTGCCGTGTTAGTCAAATGCACACTGATATTGTACTCTTCATCGGACTTCCTTATTTTTCTGGCCGTCCGTCTTTTTCTACAAGTACACCATCTTATGGTGTAATCACCCAGTGCCAAACCCTTAGTCTACCCAGGGATGCCTGAGCACCCAAAGGGTCCAAGCTGAAAGgaaagaaaggggaggttgcTCGGCAGGTCTCACTTttattcagatacagtatgccATGAATGTCTTGCGTGGATGTCAAGGATGTATCTTTTTGCAAGGGAAATCTGTTAGAGAATTCACAATCTGAACATGAACTTGACGCCAGATCTTAAGTGGTGTGTTTCTGCACCTTGCCTCCTTGAGTACAGTTCATTGGCTGGGTTTACAGTCTTTattgcgctctctctctctctctctttctctctctctttctttctttctttctttctttctctctctctctcctagtACATTAAATAGTTCATTCTGCATTTCATGCTGAGAAGCTGATTTTCCATACAGATAGCGAGATCATTTGAACTGTACAGCTGCACTTTAGCACATGGCTAGATAACCCATAAGTCAGGCTGAGGTTTGAGAAACCTTTGATAGACACTTTAAAAGTTGTCACTCTTAAGACAGTATGCCTCTGTGGAATACGAGTTGACTCAGGTCAGGATCACTGTCATCCTTGTCTAAAGATAAAACCCACAGGGAGGAATTTAATTCATTTCTTGTCAAAACGTCAATAAATTTGATTCTTCTCAAGTTCAATGTTGCTAATGTGAGCACAGCAGACAAGTTGAGAGTgagctgacctttgacctcagcTTGACCTTACAGTAACACCTATGATGTGGGCTTGTGTGCTAAACCACTCCAGTGCCTTCTGATGTCCTTTTCTAAGTGTGGAATAAATAAAGTGCATTCCTGACTAActca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67178 lncRNA downstream 109905 16416921 ~ 16418613 (-) True G50278
TU67119 lncRNA downstream 148895 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA downstream 148895 16373144 ~ 16379623 (-) True G50230
TU66980 lncRNA downstream 571846 15952530 ~ 15956672 (-) True G50143
TU66991 lncRNA downstream 595220 15930121 ~ 15933298 (-) True G50153
TU67316 lncRNA upstream 3157 16580076 ~ 16580982 (-) True G50371
TU67324 lncRNA upstream 84079 16660998 ~ 16663045 (-) True G50378
TU67328 lncRNA upstream 89131 16666050 ~ 16679676 (-) True G50382
TU67335 lncRNA upstream 137142 16714061 ~ 16714748 (-) True G50389
TU67417 lncRNA upstream 367852 16944771 ~ 16944972 (-) True G50443
XM_039799872.1 mRNA downstream 1866 16460250 ~ 16526652 (-) True plxnd1
XM_039799881.1 mRNA downstream 98953 16426070 ~ 16429565 (-) False mbd4
XM_039800557.1 mRNA upstream 49208 16626127 ~ 16628418 (-) True mrps25
XM_039801804.1 mRNA upstream 53653 16630572 ~ 16643870 (-) False nr2c2
XM_039801803.1 mRNA upstream 53653 16630572 ~ 16643870 (-) True nr2c2
XM_039801805.1 mRNA upstream 57057 16633976 ~ 16643870 (-) False nr2c2
XM_039801227.1 mRNA upstream 72978 16649897 ~ 16658802 (-) True wdr46
TU67071 other downstream 244662 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1674701 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1674701 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1993913 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2383296 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 1111196 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1262625 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2303446 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3122854 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 3124411 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile