RNA id: XM_039799910.1


Basic Information

Item Value
RNA id XM_039799910.1
length 8593
RNA type mRNA
GC content 0.44
exon number 27
gene id dnmt3ba
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12147414 ~ 12169209 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGGGTAGCTCTTTTATCAATCCTTTCTTTTGGCAGTTAGACAACGctgtcaggtttttttttatcatgggTCCGCGTCAACCGTTAAAGTTTCACCGTGATAAACTCGCCTTGTGATCAGTGCTGTAACACAGGCCACCTGTTGGCCTGATAGAGCGCCATTACATTGTTTCAACGGAACACAAAGTACGGTAGATAAGCCGCAGGATTCAGGAAACAGGTCTGACAAACAAACGACCAGTCGTTTCGACACAGGCTGCCATAATTGCGTGTTTATAAACACGTTATCTCTTAATGCATTCATGGCGTAACGATAACAGCTAGCTAAAACCAGCTTTCCTTTACTATTCAGTTTTCAAATGTTACCATATCACCCAttaaactagctagctaacgttagctagctagtataACCGAAACGAACCACAGCTTGCCAACAAACCAAAGATCATCGAATGTTAGCTTAACGTTATAACAAGACATTCGTGTGGCTAACGTTATAGCTAGCTTGTAATAAGTTTGTAACGTTGTCCCTTGACGAAAAAGGTCTCTACTACTCCTGAACGAACTGAAATGAAGGTTGACTCTACTATTATGTTTATCTCTAATTTTCTATCACGATAATATACCCAACGATATGATATTCATTTTAGTGGCTAGCTAATTCAACATTTCACGGTGATAGCCTGCATCGGAAGGTCGGTAGGCTCGCGAACGCgagagctagctagcgttaAATTAACGTCAGCATATTTGCCGATAAACTGGAAATCGGATATGGTTGCTTTGCCTGCCGTGCGGGCTAgcatattattaatttattattgatCAACCTGTGCTAATGTTGAGGGGGTGGGGTAATAGCTATGTTAAACTATACActgatttattttaagaaatacATTGAGAATTGAGTTCGTTTGTTCTGCAGCAATTAAATCGGCGAGATAACCGTTatgtagctagctatgtgtaCTTGTAATGCGGCGATAGCATTATATTTGACTAATAATTAAGCCGCCTGTTCTCATTTTGGATGGGTGGAGATCTCGCGGCTAATTTAGCAGTCCTACTACGGGACAGCCTCCTACACATCGGTCGTCCAATGGATCATTACGCAGACGTCACAAGGGCCGGTCTgcctatgtaaaaaaaaaaagaaaaagtgaagtGCTTCAGGAGGAAGCGAAGAGTCAGGAGGAACATCTATCTATAAGGGAACCGGCGAGAGAGCTGCAAGATGGCAAGTGCAGCGATTGTGCCCCCAGACTACATCCAAGATAAAAGCAGCCGCCTTTATGTGGTGACCTGGTTCAACAACCTGCTCAAGACAAACTTCACAGATGTGGGGCAGCTGGGTTCAGGTGCATGCCACTGTCAGATCATGGACTTGGTTATCCCTGGCTCTGTTGATATGACCAAGGTGAGGTTTGATGCGCAAGGTGAGGATGACTGTAAGCACAATTTCCATCTCCTCCATGAGGCCTTCAGGGAGAGCGGTATCACAAAGACTTTTCCAGTTGATGAGATTATAAAAGGGGATTCTCAAAGCAATTTTGAGACCCTGAAGTGGTTCAAAGTTTTCTACACGACAAATACGAAAAGTGACGAATACGACCCTGTGAAAGCTCGGGACAGTCAGGATATCAGCCCTATTGTGGTACCTCCCCAATTGCATAAAGGGATATCTAAATTGGAATCAGACACGGAGGAGAAGGGCACTGTGGTGACTAAATTTCCTTTCACTGAGAAGTGGAAGGGAATTCATGAATGGGCTGACCAGAGTAGTCTTGGAGAGCAATATACCTTCTGCCGCTCTTGTGACAGAAACCTGAAGACATTTTCGAAAGGCCTTATTGAACTCAGGCGACATGcggaaacaaacaaacacaagaaaaaggCTAAAATTTACAGGAGCCAACACTCTGAGCTGTTGCCCTGTAGCGACGCAGCTATTCAGTTTATTCACAAACACTGCAACACTGGCTCTGCTAAAGGGAAACATGTGTCTACACACTTTGCACGCAGTAAACTGGGGCTGCATTACCCCAAAGACATCACATCTGTTTGCCAACACACTCCTTACTGTGTATACATTTATGGAGGGGTAACCCTGGGAAAGGATGCTACTGTCTCTGTGGTCCTTGTTGGGTTTTTTGATGTCGAAGCCTCCAGGCACTGCATCCGATTTCTGGACGCTCTTGCAGGGGATCAAACACCAGCAGCAGTGGTGGAGACCTTGAAGAAATTCGGGTTACACACCGATAATCTTGCTGCTGTTTATTCTGATGGTAAAGGTGCAGCCTCAGAGCAGATCTACACACAGCTCAGGGAACTCAACCCAAACATAGTAGCCTTAGGTGGGCTGTATGCCGTTGCTGATGCTGCTTGTCATGCAGGGGTTAATAAGCTCTCCAAACAGGCTCAAGAGTTGATCGTTGACATCCATGCCCACTACTCTTCCTACTCTACCAAGAGTGACAAGCTCAAGGCTCTCTTTGGCTCAGATATCAGTGCAGACAGTCCATCATTTCATCTCAACACCAGCTGCCTTAAGTTCTGCCTGCTTGTCACGAAAATCTTGGAAATATGGACAGATCTCATAATGTACTTTAAGTCTTGCGACAAGGATGATGACAAAGCCAAGTCAATCTGCTCCCAGCTGCACGATCCCAAAGTCAGGGCAACATTTATGTTCCTGGAGCACGCCCTCAAGCCTCTGCACAATTTCCAAAGGCATCTGCAGACACAGCAGGGAGCTGCTCGAGCGAATGTGCTGCTCATCCTAGAAGAAGCCAGTAGCCTGCTATGCACCTACACCTCCTACTTCCTTCACCCTGAAGCTGCTGTTCGCTTTCTCAAAGAACACGATGCCCAAATCCTAAAAGACAAGAAATTCCTCCTGTCGAGCCCTGAACTCAGTCTGGGCGGGAAAGCTGTGGAAGACTTCCTGAATGAGTCTGAGGCTACAGAGACACTGCCACTGTTTAAAGAGCAGGTGTTGTCTTTCTATGTCACACTCGCAGGTTGCATTGCACAGGAGCTGCCTCTTAATGACAACATGCTAAGGAGCATAGCTCAGCTGCTGAACCCCCAGAGCAGGCAGAAGGTGACTGGGGAAGAGGTTGGGGAGCTTGGGACCAAGCTGCAAatctgcagctcccctgagGAGGTCAACCAGCTCACAAGTGAATTCCTTGAGTATCAGCGGgctgaggagggagagaaggacaACTCGGCAGTGGTTTTACTAGAGAAACACTGGGCCAGTGTACTGAAGGACACCAAGCCGACTTCAATCTTCAGAAAGCTTGTTTTGACCCTGCTGGCTCTCCCCTGCCCTCCACTCGAGGCCCAGCAGGTTTTTACTCAGGCCCTGGAGAGTGAAGATGCTGCACTGTTCTCTGAGAGTGAAGCCCTAACAGAAAGCGATTGTGATGTCATGTCTGACAGCGTCCTCTCCGACAGCACCTTGGTTCACACtgaagCGTGTCCTCTTTTGGATGGCAGCAGTAGGCGATGCCACAGCTTTGGCCTCTGGTCTGAGCCTTTGGCTACGGTAAACAGAACAGCCAATAAACTGAATGGCCTTAATGTGAGAGTGAAGCCATGTGAAGTCCGCCTAACAAAGATACATCAACATGCCAATACACCTGGAGAGAATGGCACCCAGTGTCAAGAGATGACCAGTAGGGGATGTTATGGCTGGGAGAGCAGCTTGCGCCAGAAGCCACAGGCCCGTACAGTGTTTCAGGCTGGTGCTAGCACCTGGTCCAACCCCGTAGGTGTTGATAATGGTCTGAAGTCCAAAGATGAGGTGGCAGAAGAGACCTCACCATTCAGTAAACCGACGCCAAGAGCACGGCGGAAACATGCCTACCAGGATGGGAAAGGGTTTCTGACAGGGGAGCTGGTGTGGGGGAAAGTGAAGGGCTTTTCCTGGTGGCCTGGGATGGTGATGCCTTGGAAAACCAAGTCATCTCCCCCGGGAATGCGGAAGGTGGAGTGGTTCGGAGACGGGATGTTCTCAGAGATCTATACGGAGGGTCTGCTGACATTCCGTGCCTTCACCAAGTGCTTCTGCAAAAATTCCTTTGCCAGCTTGCCAACCTACAAGGAAGCCATCTTTCAGATCATCGAGTTGGCAGGTGAGCGATGTGGGAAGTCTTTTGCTGAAGCGgaaggaaataaagaaaaagagctGAAGCTGATGCTGGAATGGGCTTCTGGAGGATTTCTGCCTACAGGACCGGAAGGATTCTTACCTCCTGATGCTGCAGCACATCATGATTCTTCTGACTCGACCATTTCTGACTGCCAGCCTCCGGCAAAaaggaaatatgtttttaaaaacaagCCAAATCCACCCGTAATAATAACCTATAACAGAGAATCAATAAGAGAAAAGGTCAAAGAGAAAGGCAAAAGAATTGAAGATTTTTGCCTGTCTTGTGGATCAACTGAGATTGAAGTGCCGCACCCGTTGTTTGAAGGTGGTCTTTGTCTAAGATGCAAGGGAAACTTCACAGAGACGCTGTTTCGCTATGATGAAGATGGCTACCAGTCGTACTGCACCGTGTGCTGCGCCGGCTTAGAGGTGATTCTGTGTGGCAACGCCAGCTGCTGCAGATGTTTTTGTAAGGACTGTCTGGAAATCCTGGTGGGACTGGGAACCTTTGACAAGCTGAAAGATGTCGATCCATGGAGCTGCTACATGTGCAAGCCGTCGCAGTGCGACGGAAACCTCAAACTCAGACCAGACTGGAGCATCAAGGTTCAGGACTTCTTTGCCAACAACAGTGCCATGGCGTTTGAGCCTCACAGAGTTTACCCCTCCATCACTGCTGACCTGCGCAGACCAATCAGGGTGCTCTCGCTTTTTGACGGCATTGCAACAGGATACCTGGTGCTCAAAGACCTGGGCTTCAAGATTGAGCGCTACATTGCTTCAGAGATTTGTGAGGATTCGATCGCTGTGGGGATGATCAAGCACGAGGGACAGATCGAATATGTCAACGACGTTCGTACCATCACAAGGAAACATCTGGCTGAATGGGGTCCATTTGATCTTCTGATTGGAGGCAGTCCGTGTAATGACCTGTCCATGGTCAACCCTCTTCGAAAAGGATTATTTGAGGGCACTGGAAGGCTCTTTTTTGAGTTCTACCGCCTTCTGACCCTGTTGAAGCCTAAGGAGGATGacaaccgtccgttcttctgGTTGTTTGAGAACGTGGTTTTCATGAGCGCCCACGACAAGTCAGATATCTGCAGATTCCTTGAGtgtaATCCAATTCTTATCGATGCCGTGAAAGTTAGTCCTGCTCACAGAGCGCGCTACTTTTGGGGAAACCTCCCTGGCATGAACAGACCTCTCTCTACAGCTCTAGATGACAAAGTGGCCCTCCAGGATTGTTTGGAAGTAGGACGCGTTGCAAAGTTTGACAAAGTCCGCACCATCACCACAAAGTCCAACTCTATTAGGCAGGGGAAGATGGGGCCACTTCCTGTCAGCATGAACGGCAAGGAGGACTACCTGTGGTGCACCGAAATGGAACAGATCTTTGGCTTCCCCAAACATTACACGGACGTGAACAACATGGGACGGAATCAGAGGCAGAAAGTCCTGGGTCGCTCCTGGAGTGTCCCTGTTATTCGCCACCTCTTCGCCCCGCTGAAGGATTATTTTGAATGTGAACAAGGACTGTGAACCGAACAGCAGCGGTAAACCTACTGCCTTATCTCCGCCCTGCATTACTAGGTAGTTAAAACTCTCCCGTCTTTTTCTGAAAAACCTAGTTTAGTATTTACTACTTTGACTTTTACAAGTGTTTAACTCATGATCCACTATCACCAGCAGGCAccgacacttttttttctcttgttagTTTTGCTCCAGGTTTCCTTTGATTAATGATGATGGTGCTGTGATCAAACAATAATGTTGCTCAAAACATTGGCCTGAATCATGAAGCGACATTAGACAGTTAGCCAGCTATCTTTGGGCTTAATCACCACGCGGATTCACCTTTATTTGGGGTAACTCACCATGGCAACCTGCCAACAGCTCCATTACTTATATTAGAGTCATACCTACAGGATCCCAACATGAAACACAGAGTTTCCAATGAAGCACTAAAGTTGCAATAGAGATCTTTTTCCCTTCATTTCAGAGTgagagacaggaaaggtgggggATGAcaggcagcaaagggccgcaggtcggattcgaacccgggccactgcaaaggcctcagcctacatggggcacacgctcttactgggtgagctagaggtcgccccaacaACAGAGATCTTTTTATAGATCAGTAGAATCACTTTGCCAACCATGATCATTATAATTAATGTCTGCTTTGTCAGCAGGAAGAGCTTgactttatctgtttttaagtATAGCATCTACCCCTAAtagtttgttgtttgttatatttataGCCTTCCTTTTCCTATTTGGATAGTATTCCCAATATTTCCTAATCCATTCTCATTCTTCGATAATGACATTTTAATACACACAGTATACATTGATAACCAGCCTCATGATGCTGGTTATTCAGGATCACCAATGTTCAACTCAAAGAGAGCCATTGAACTTGCTTCGTGGTTCAGGCCTCAGGATCTCTACCTCAACACTGATTTACTGGTTAAAAAATCTgcatttacacttttttttatttaatttatgaaTATGAAATCTTGTGAtttgtatattatattgttttatatcataATCTTACCAGGGATTTTAAAGAAGCAGTGTGTGGGATTTAGGGGGGGTTTATTGGCAGAAATGGAATATAATATTTACAATTATGTTTTCATTAGAGACCTGAAATCAGTCACCTGAAACTGAAGGTGTGTGTTTCCGTTAGCTTAAAATGAGCCCTTCATGTCTACATAGGGAGCTTCTAACAGTCGGTTATTTGAACCCTCTTACAACGTGACGTTGTAGTGAATAAGTATGAGGCCAAACGCAACAATAATCTACTTTGTAATCCCTTATACATAAAGACGAGACTCACCTGACAAGTAACGAGATGTAACCAATTTTGTTTGGTGACTACATTCTAGCATCTCCCCTCACGCTTAGAAAGGGAGGGGTGAGTGCAGGGGTATTCACTGGGTTGCAATCTGCAACCACTGGATgccactaaatcctacacactgttCCTCTAAGTCCTTTAAGTCTGATCTAAACGTGTTCATCACTATCTGTGATTGTTTTTACAagccacatttttttaaatctgcttTTTAATacgtttttatccaaattacATTTATCTCACTGTACTGCACCAGTGATTTTGTCCGAACTTACCTCACTGGTTTTGCATTGGTGCTAacattttatctattttaagGACTGCTATTTATACCAAAAATGTTTTCTCTCTACTCATTGAGAACaaactgtattttaaatatttcaacTGGAGTGTCTTCACTATTACTGTATCAAGGACCAGGCTGCAGGGGTCTGGTTTAAACATAATGAGCAGTGTCTTCTAACATAGGAGACCTTAAAGGATCATTGCGatggttttacacatttcctCCCCTAAATAACAAACGTGTGTAcactataaaacaaaaaaaagccaacCATATTTCACAGCGCACTATAAGTTCTAGCCAACCATGCTGCTTTGTTTAAGTAATAACGTTTAAGagcttttattatttctttatttaaaaaaaaaaaagacatctttGTCAGGGTCAAACAATGTAAGATACTATTAAAACATACATGCACTGTACACACAGTAATGATTttctttagttttatttttttttattttatgtatgacAAATAAAGAAAGTCCCAATGAAGAGTGGGCAATGTAAAAAAtatgacaataaataaatataatttaagaaaaaaataaaatataactcaattatgaataaaaaaatagaaccaatcaaataataaaaatctttttttaaatagaacaaaaaatggagaaataaatcatgggaaaaaaaactaaagatgaGAAATCAGCATCTAATTCAGTAAATCCAAAATATTTCACCGTCCCCAACAGGTGGGGTTAATGACCACAGCTTTTAAAAATGCAGATCACCATTTTTTAATCAGGTAGCCACTtgataaaggcttttaaacttTTGGACTTATTAACGAAGCAGCAAGCCTTGAACTTGTCGTGGACAGTAGCCCGCCTGTGTATCAGGACCACAGGCTTTGTGTCTCACTGTCTGATCCAACTGGTGCTTCCTTAAAGGCAGAATGAGTAGGATTTCTCCGTTGCTACGTTTCTGAACTGAGTCCGCACACAAGATAATGCTCCCGTGAGCATAGCTTTTTTTCATGGTAATTAAATATATGTCCATGGGAGCATTACCTAGAGTGCAGACTCTATTTTCAGTCTTTTATCAGCCAAACAATTcattgattaatcaagaaatAAATGGCAGATTAATGTTTACGTAGTGTATGCACAAAAACCACTGATATGGCCCTTTAGATCTTTGAGACATGAACCAttagttttcttttgttttctaaatgtttgatctttttttttttatgaaaacttTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65570 lncRNA downstream 381 12146728 ~ 12147033 (-) True G49112
TU65542 lncRNA downstream 6000 12140935 ~ 12141414 (-) True G49092
TU65530 lncRNA downstream 25864 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA downstream 25864 12119752 ~ 12121550 (-) False G49084
TU65465 lncRNA downstream 84159 12003267 ~ 12063255 (-) True G49024
TU65582 lncRNA upstream 42534 12211743 ~ 12213541 (-) True G49118
TU65583 lncRNA upstream 42534 12211743 ~ 12213541 (-) False G49118
TU65579 lncRNA upstream 73993 12243202 ~ 12244833 (-) True G49115
XR_005639120.1 lncRNA upstream 182218 12351427 ~ 12368708 (-) True LOC120558423
TU65653 lncRNA upstream 202612 12371821 ~ 12373308 (-) True G49178
XM_039801026.1 mRNA downstream 28268 12103891 ~ 12119146 (-) True LOC120559362
XM_039800845.1 mRNA downstream 147969 11986410 ~ 11999445 (-) True LOC120559249
XM_039800847.1 mRNA downstream 183385 11959754 ~ 11964029 (-) True peds1
XM_039800848.1 mRNA downstream 190023 11953175 ~ 11957391 (-) True LOC120559253
XM_039801834.1 mRNA upstream 51525 12220734 ~ 12223028 (-) True ppdpfa
XM_039799269.1 mRNA upstream 55095 12224304 ~ 12230288 (-) True LOC120558333
XM_039801712.1 mRNA upstream 63896 12233105 ~ 12237737 (-) False dnajc5aa
XM_039801709.1 mRNA upstream 63896 12233105 ~ 12237737 (-) False dnajc5aa
XM_039801710.1 mRNA upstream 63896 12233105 ~ 12237721 (-) True dnajc5aa
TU65528 other downstream 18989 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 18989 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 256368 11888941 ~ 11891046 (-) False srxn1
TU65038 other downstream 1492596 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 2121589 10024994 ~ 10025825 (-) True G48523
TU65587 other upstream 51528 12220737 ~ 12223002 (-) False ppdpfa
TU65659 other upstream 219772 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 250577 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 1083203 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1971171 14140380 ~ 14145222 (-) False LOC120558710

Expression Profile