RNA id: XM_039799940.1


Basic Information

Item Value
RNA id XM_039799940.1
length 1718
RNA type mRNA
GC content 0.54
exon number 16
gene id ptpn18
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40160007 ~ 40186156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgtgtgtttactgtgatgTGATGACAGGTGGTGCGTTCACAGTCCTCGGTGATGAACAGaggttgtgtgtttactgtgatgTGATGACAGGTGGTGCGTTCACAGTCCTCGCTGATGAACAGaggttgtgtgtttactgtgatgTGATGACAGGTGGTGCGTTCACAGTCCTCGGTGATGAACAGAGGTTCCAGTCTGAGCAGCGAGGTCGGAGCTCTGAAAGAAAACATCAAGAAGAACCGATACAAAGACATCCTGCCATatgacCAGTCTCGAGTGGTGTTGTCTCTGCTGACCTCAGACTCTGACTCTGATTACATCAATGCCAGCTTCATCAAGGGGGCAGCAGCTGACAGCAGGTACATCGCCTCTCAGGGCCCCCTCATCTCCACTGTGATCGACTTCTGGAGGATGATCTGGCAGCATGACGTCaaggtgaTAGTCATGGCCTGCAGAGAAATAGAGATGGGaaagAAGAAGTGTGAGTGTTACTGGTCTCCAGTTCAGCAGTCTGCTGCGTTTGGACCGTTTACAGTCTGCAagaaGGAGGAGACGCGTCCGAATGAAGACATCGTGGTCAGAGATCTGACCGTCACCTACCAGCAGGAGAGCCGTGCCGTGACTCAGTATCAGTATCTGTCGTGGCCGGATCACGACGTTCCCTACGAGGCTGCAGGAGTCCTGGACCTGCTGGAGAGAGCCAGAACCAGCCAGGGAACACACAGCTCGCCTCTGCTGGTACactgcagtgcGGGCTGTGGGAGGACCGGCGTCATCTGTGCTCTCGACTACATCCATGACCTGCTGGTTACCGAGCAGATCAACACGACCGACTTCAGCATCATGAACATCGTCCTGCAGCTGCGGAGACAGAGGCCCTCGGCCGTCCAGACTAAAGAGCAGTATCAGTTCATCTTCACAGCAGCCGTCTGCATGTTGGAGCGACTCCTGGAGGCGGCCGCCGATCGTCAGCTTTACTCCAACCTGCCGCAGAATGGGAAGGACGACGCAGCTCCTCTACCtccgCAGAAGAAATCTGCAAAACCACCTACTGTCTCCAAGAGACTGTCACAGCAGCCGGTCATGAATGACACGTACGCTGTGGTCAACAAGCCCAAACACCCCCCTACAGCAGACCCCGCCCACTCTGCTGTAGCCCCGCCCAGATCCAGCAGGACCTTGCCCCCGTCCCATTACTATGACAACGACCCTGCAGGGGCATCGGCAGCGGCAGTCTACAGCACCGTCAGACCTCGAGCTAAACCGAACAGCCTGTCGCTCTCGGCCACGCCCATCTACAACGCGCCGCGGTCGTCCAATCACaggctggaggaggaggggctGCTTCCAGCTGAACGTCATTCATCAACGGACCACGATTATGAAGATTTGTCACCGTCGGTCCCGGACCTGACCCTCTGCTCACCTAGCGGTATCGggtTTAACTGTCGTATTCAGAAGCCAAGAGGACCCCGAGACCCTCCGGCCGCGTGGAGCCGCCTGGAGAGATGAAGCCGTTAAACTTCACTGGTTCCCAGTTCCCTTCCCTTCCAGACTGGGAAGATAAAGAGCTGTTTTTATTGacgtttttgtaacttttttgatgcttcatttgacattttgtccaaatttccaATGAGGGTGTATTCAATGTCCATTAAGTAATGTGGGAATTTCCCCCCCGCCGATTGTCACAATAAAATACCAAGGATAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76205 lncRNA upstream 115165 40038647 ~ 40044842 (+) True G56810
TU76206 lncRNA upstream 115165 40038647 ~ 40044842 (+) False G56810
TU76210 lncRNA upstream 115392 40043924 ~ 40044615 (+) True G56812
TU76208 lncRNA upstream 121684 40033621 ~ 40038323 (+) True G56811
TU76203 lncRNA upstream 133274 40026309 ~ 40026733 (+) True G56808
TU76273 lncRNA downstream 956 40187112 ~ 40187702 (+) True G56838
TU76230 lncRNA downstream 17911 40204067 ~ 40264785 (+) False G56827
TU76233 lncRNA downstream 17911 40204067 ~ 40262903 (+) False G56827
TU76237 lncRNA downstream 17911 40204067 ~ 40262903 (+) False G56827
TU76255 lncRNA downstream 26538 40212694 ~ 40314257 (+) True G56832
XM_039799447.1 mRNA upstream 241494 39905690 ~ 39918513 (+) True LOC120558439
XM_039799944.1 mRNA upstream 262521 39895965 ~ 39897486 (+) True LOC120558740
XM_039799942.1 mRNA upstream 348603 39808863 ~ 39811404 (+) True LOC120558738
XM_039799945.1 mRNA upstream 399860 39754539 ~ 39760147 (+) True LOC120558742
XM_039800155.1 mRNA upstream 846278 39282009 ~ 39313729 (+) True bcap31
XM_039801763.1 mRNA downstream 243959 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA downstream 243961 40430117 ~ 40451414 (+) False hm13
XM_039801778.1 mRNA downstream 278395 40464551 ~ 40464926 (+) True LOC120559775
XM_039801429.1 mRNA downstream 283127 40469283 ~ 40469564 (+) True LOC120559596
XM_039800489.1 mRNA downstream 310693 40496849 ~ 40515023 (+) True LOC120559068
TU76217 other upstream 11387 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 48719 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 142692 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 241644 39808857 ~ 39918363 (+) True G56127
TU75107 other upstream 595739 39531153 ~ 39564268 (+) False G56112
TU76286 other downstream 269953 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 914438 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 935119 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 2285764 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 3192190 43378346 ~ 43385991 (+) True zgc:113363

Expression Profile