RNA id: XM_039799942.1


Basic Information

Item Value
RNA id XM_039799942.1
length 1912
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC120558738
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39808863 ~ 39811404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCATATAAAGAGCCTTTCTTACGGAGCTGCAGGAGACACACTCTGAACTCTCTTTACTTCAGCTGCAGTATCTACTCCGTACTCTTTAACCCGAACAAGAACAGTAACCATTACAACCTAAACATGGACAGCAATTTTGGTTTGAGCAGAAATAATGAGGAAATGAGGATAGTGATGGTGGGGAAGACAGGTATTGGGAAAAGTGCCACTGGAAACACCATTCTGGGACGAAAGTGCTTTGAGTCAAAGTTCAGTGCAATGTCTATGACTGTAGACTGTTCCAAGGGCAAAGCTGTGGTGGATGGGCAACAGGTGGCTGTTATCGACACCCCAGGCCTGTTTGACACCAGGTTTGGCATGGAAAAAACAACTAAAGATATGAGCCAGTGCATCTCTTATGCTGCTCCTGGACCCCATGTGTTCCTGGTGGTCATCCGGCTGGGCAGATACACTGAAGAGGAAAAGCAGACAGTGCAAAAGATTCAAAAAGTCTTTGGCCAGGCTGCAGACAGATACAGCATGGTTCTCTTTACTCATGGGGACCAACTTGAAGACACAACTATTGAAGACTTCTTGAAGGAAAGCCCAGACCTGCAAGAACTTGTGGACGGATGTAATGGCCAGTACCATGTCTTCAATAATAAGCTGAAGGATCACTCTCAGGTCACTGAGCTGCTCCAGAAGATCAGAAATTTAAACCAGAAGAACGGAGGAAGCCACTACACAAACAAGATGTTCCAAGAGGCTGAGAGGGCAATCGAAGAAGAGAAACAACGCATCCTGAAAGAGAACGAAGAGAAAATACGCAAAGTACAACAGGAATTGGAGAGAAAACTTCAGGAAAAATATGAAAAGGAGATGAAGAAAATGAATGAACAACTtcaggctgagagagagagggagaggaaagagagagaggaggagaggaagagggagagggaggatatgaatgaggagagaaagagggagagggaggagagagaatcagagagaaagagagacggagaggagaaagaaagggagtATGAAAACctgatgaataaaatgaagGAACAGCATGACAAAGAactgagagaggaaaaagaaaagttaaagaACAAATATGGAAGTATGGCCAGAGAGAAAGCTGAGGAGAAAAATCCATTTTATCGTTTCTTTGAAATAATTGGAGAAACAGTTGTGGGATGGTTCATATAGTGAGTGATTCAGGCAGCAAAACTACAGAGTATCCATCTAGAAGCTCCTAGTCAAGAATATATGAAACAATTATTTCATCCATAGAACTAAAATCACAATTATCTTTGTTATTATGTGAGTGAATGATAATAAAGctaaatgtatttgttaaagTAGAGCTATATACTGTAGGTTAGTAAGGCCTGTTTACTCCATGGTCTACTCATCAAATCATTCTCTCACACTGCCACCTAGTGTTGCTTTTGCATTATTTTAATAAAGCCCAAGGAGATATTccataatataattattaatacattttactatACAGAACATATAaacgattttctttttttcagttttttgtcagATTTACATGAATGTATTGTAGTAAATCATTACGTTATTTGATTTTGTCATAAAGGCTTTATTTCATGGATTATGTTGATAATTGATGCCACTCAATAACAAGTTATCTATGTGCTGATGTGCTACACTGAACAAGAAATAAAGATGATATTATACTTTTATGTTCTCCAATGCCATTCTCATTGAATTCAAGCACATAATGCATTAATCAAGTAATTCTCTTTCTCGTTCCACAAAATGTAAGCAGAGGTTTCTATTCATTCAgtactttaatgtttaatgtggtTCATGCATGTTATTAAGTACTCTGAATTACCTTTGTGTATAATATGTGCTATTCAAATAAACTTGCTTTGCCATCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75170 lncRNA upstream 43930 39746452 ~ 39764933 (+) False G56138
TU75169 lncRNA upstream 43930 39764305 ~ 39764933 (+) True G56138
XR_005639176.1 lncRNA upstream 64693 39656666 ~ 39744170 (+) True LOC120558745
TU75148 lncRNA upstream 64755 39656659 ~ 39744108 (+) False G56127
TU75160 lncRNA upstream 66299 39692847 ~ 39742564 (+) False G56133
TU76203 lncRNA downstream 214905 40026309 ~ 40026733 (+) True G56808
TU76208 lncRNA downstream 222217 40033621 ~ 40038323 (+) True G56811
TU76205 lncRNA downstream 227243 40038647 ~ 40044842 (+) True G56810
TU76206 lncRNA downstream 227243 40038647 ~ 40044842 (+) False G56810
TU76210 lncRNA downstream 232520 40043924 ~ 40044615 (+) True G56812
XM_039799945.1 mRNA upstream 48716 39754539 ~ 39760147 (+) True LOC120558742
XM_039800155.1 mRNA upstream 495134 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 562827 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 571194 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 608456 39190083 ~ 39200407 (+) True pim2
XM_039799944.1 mRNA downstream 84561 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 94286 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 348603 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA downstream 348606 40160010 ~ 40186156 (+) True ptpn18
XM_039801763.1 mRNA downstream 618711 40430115 ~ 40451414 (+) True hm13
TU75107 other upstream 244595 39531153 ~ 39564268 (+) False G56112
TU75120 other upstream 252876 39531153 ~ 39555987 (+) False G56112
TU75108 other upstream 252876 39531633 ~ 39555987 (+) True G56112
TU75121 other upstream 263556 39523146 ~ 39545307 (+) False G56112
TU75122 other upstream 263556 39531153 ~ 39545307 (+) False G56112
TU76202 other downstream 205581 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 290981 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 299054 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 644705 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 1289190 41100594 ~ 41102972 (+) False LOC120559073

Expression Profile