RNA id: XM_039799977.1


Basic Information

Item Value
RNA id XM_039799977.1
length 3971
RNA type mRNA
GC content 0.49
exon number 13
gene id nol9
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9522095 ~ 9535683 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACGCGACCGAACTCCGGGAAAAATCTTTGTTGTCCGTTATTAAACATCAACATGCCCACCAGTGACGATAGAATATCTACAAATACAATTATTAAATGTGGCTACAGtactttttgttaatttttatttgtgtgtgtgagcacgCTAAATAAAGAGCAATAGTTTTGCTTAATAACTTAAACGTAAATAATTTAAACTCCGGGTTAAACCATAGTCAACCATCTAGATGCGGCGTCTGTTTGTGGCTCACACATGTACGCTAGCTCGTTAGCACTGCTGTGGTTACAGTTAACCAGCTCGTTGGCTTCACTTTACCAGTTATTAACGCTATCCATTTAATAAAACAATTAAGAGTCATCTCTACAGTTCCGCGTTGTTTTCCACAAGCGGGGGCTCCCCCCTTTTTGTTTTTCGTCGGCTCCCACATGAATAACTGCTGTTCAGAATCATGAAGGTGAAACCCGCACAGGTTAAGGGCCACGCTAAATCTCAGAAATGGAAGGACGTGAGGGGCAAACGGTCCCGGCCTCCCATCAGTTCCTCAGAGCTCAACTCCAGTCCTGTCGTGGCCAGGATGGCGAAGGAGCACCAGGCGTCTGTGAAGAAACAGCCCACCGTCAAGAGGTTGAAGAGTAAGGCAAAGCCTGTCTCCGACTCCAAGAAAAACACCCATCAGCCTGCATTTAAGAAATCTCCCACTCAGGCTAATGGAAGTTCAGCGTTTACAATGGACAACGGTTCAAATGACTCGGTGGACTGGAAGGAGTATTCCCAGTCCATTAATGGGAATGGTTTGGAGACCTCAGGGGACAAGCAAGATGTAAGCCCAAGTAGACTGGAGGGAGAGGCTCTCCATTACTGCGCAGAGAGAGATGATCGACAAAACCATGCAGTACTTGTCATGGAGAAGGATCAGACCCTGTGTTTCCGTGGGAAGTGCTTCTTGACCTGTCTGTATGGTCGGGTGGAAGTGATGGGGTTCACTATTGAAGAGGGCCAGCAGTCCTATCCACTCTTCTCCCCAGCCTCACATTGTCCACTGACCATTAGAGCCCAGGAAAGCTCTGATCACTCGAGAGATGACCGATCGGAGGCTGCGCCCATCCTCCGCAAGTACCTGTCAGCAGCATCGCGGAAAAAGTTGCTAAAACGGATTACGTCAAACTCCTCCATCATCCTACTGGAGCCCATGGAGACGCCGCTGACGCGGTTTCTGTCGAGCTTCACAGATCGCAGTGAATTGTTCAGCCCCCCGGTGAGTGAACTGATGTCAGCTGTTCTTGACACTCCCCTCAATGGTTTGGGTGTGATTCCCCTGGCCAGAGGCGTCGACGGCCTGAAGATGTCAAGCACCTACAGAGATGCTCTTAACATGGTCGTCAGCGCCTGTAGAGGGGACATGGATGGCTGTGCAGTTATCCTTGTATGTGGTACCAAGAATGTGGGCAAGTCGACGTTCATCCGCAGCCTCATCAATACCTTACTAAATCAcactACTGGTGTAGATTATTTGGAAGGGGATCTCGGTCAAACAGAGTTCACTCCCGCTGGTTGCCTTTCTTTGTCGACTGTCAGAGAACCACTTCTGGGTCCTCCTTTCACACATCAGTGCACACCAGAGCACATGATCTACTACGGTCATTCGTCGTGCGAGGCGGACTTAGAACGCTACCTGGAGTCCCTTAAATCCTTGTGGCGTAGACGCTCCCCGAGCCGAGAGACTCCCGTCATTATCAACACCATGGGCTGGGTCAAAGGTTTTGGATTCCAGGTGCTGGTGGACATGATCCGCTTCTTCCCGGTCTCGCACGTGGTCCAGCTCGGTCACAGCGGCATCACCCAGTGTCCCGCCCTCACGCCGGAGTTTCTGAGGACGGCACACGGCTGCCAGACGCACCCGCCTGCCCAGACCGCTCTGGACGAGCTCACGGAGAGCCACAGCCCCCCCCGGAGTTACACTCACCTTATTGTACAATCGGAGTTTCAAGGAGTGGGACGCCAAGGAACAGCGAAACACCAGCGCACCAATGAGCACCGAGAGCTGTCATTGCTGGCTTACCTGAGTCAGCTGCAGTCTCCGGACCCCGGGCCAATCAGACCACTGAACAGCCTCACCCCCTACCAGGTGCCCCACACAGCAGTATCTTTAGGTGTGATCCATTGCGAGGTAGTGCCCAACCACATGTTTTATGCTGCCAATGCCAGTCTGGTGGGACTATGCTGCCTGGGAGAGAAAGTGACAAGCAGGGGGGGCCCAGTCCTGCTGTCGCAGGCTCCCATCTGCCCATGTGTGGGCTTCGGTGTGCTTCGAGGCATCGACATGGCGCGTGGCCTGTACTTTTTGCTGACCCCTGTAGATCCCACCATCCTCCGTAAGGTCAACTGTCTCCTCTTGGGAGCGATATCGCTGCCTTCCTGCATCCTCACATCACAGCCGGGCTTTGAAGGAGAGATGCCCTATGTCACTACAGACTACAGTTTTGATCTCACTGGTGCAGGAAAGCTGCGAGTCTTCAAGGGACTGATGAGACCCAGTCAAATGGGGATGCAGTGACATTTTCTGCGTCGGTTTATTGCCCCTTACCCTTCTCGACTGGTGTCTCGCGCTGAACCAGTCAGCAGTGGCCTTTTGAATGTACAGAACTGAAGTTGAGCCGTATCGCATATTCTGCAGGACGAGATGGCTGCCTTCCTATTGCTGGACTTCTACATATATTTGATAGCGCTGAGAAGGAGTTTGTCTTTTCTGTCACATGGACAATAATGGGCGTTTTCGGACCGGAACACATATCTAATAccccccccttttctttttttttgtttgttcgaACACTGTTTTGAGGGACTTTTACTTCAGAGTAGGTACTCTCCCAGCACAAGAGGAACTTTGAGTGAGGTGAGTGTACAGTGATTGGTGGTCCCTGACGCAAGTGTACGTCAATGATCGGTTGAACACGTGAGCCAATGCAGCACTGGGAACCGCCATTTTGAAccgctagctaactagccagccaCTAAATTAGTAAAATCCAACAACTTAATACTTCATCCACTCTTGTCACAGTGTAGAAAGCGcattgctatcgccagatgagtgacaactttttcggctcattttctgtaaccagCTTAGAATTTAAAAACATGATCCAATTAGCAAACTAGCGTTGGCTAACGAGACAAACTAGGGAATTCCACCTCACTTTAATGCTACACCGGTTACAGTAAAAAGAGCTGAACAGCAGGCTGGTGGCCAGCATAACGGTCCCTCCTCCTCACTCCCCGCTGCTAGGAGACTAACGTTACTTCGCTGGGAGGAGAGCggacactagctagctagctagctagctaactagcctgCTCCAGGGACGGAGCtgcgggggagtgaggcagaggaGGACCGGCTGGCTTACGTCACTTCAGTGTTTCTATTGGCGGTGCAAATGCAAAATTCCTTAAAGGTATGTAGTTCTCGGGGGACCTCCCCTGTAGATATTTCCTCTCATTGAGACCCCAGAACTGTTTGGTTTCGAAAACCTCTATTATCACACTTTTTACTTAATtaaagctcttgtttaacatctcTTCTTTGTATAGATGCATTCCAAAGCTGCAAAAGAATTCAAAAACCTGCCAGATATTAAATGAGAAACAACTTTGGTTCAGACTTGTGGTTTTCTTGCTTTAAAGTGCTAAACCCATCTTGATATTAACTTCAGTCATATAGTCCTAGATCCATATAGAGTGTAGAAGGCAGAGTTAACGAGGCTTCTTTCACACATTTTCTGTGAATCTGAAGccctttttttgtcattgttgtgctttAATACCAGTCAAAggttttacagaaatgtctaTTTTTACTGTTGACTAACTCTGCATTAACTGCTGTACATTTGGTATTGTGTTAAAGGGACACAGAAATGTTCCGGCATTTGTAGGTCATTAAAAACTTTTTGTAAATGCAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64642 lncRNA downstream 28223 9427206 ~ 9493872 (-) False plekhg5b
TU64646 lncRNA downstream 135180 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA downstream 136874 9379000 ~ 9385221 (-) False LOC120558858
TU64502 lncRNA downstream 236843 9284917 ~ 9285252 (-) True G48311
TU64497 lncRNA downstream 239573 9282296 ~ 9282522 (-) True G48306
TU64661 lncRNA upstream 29532 9564964 ~ 9565214 (-) True G48430
TU64673 lncRNA upstream 192442 9727874 ~ 9729476 (-) False c1qtnf12
TU64672 lncRNA upstream 192793 9728225 ~ 9730079 (-) False c1qtnf12
TU64674 lncRNA upstream 192793 9728225 ~ 9729476 (-) False c1qtnf12
TU64671 lncRNA upstream 225458 9760890 ~ 9762449 (-) True G48436
XM_039799968.1 mRNA downstream 2640 9427600 ~ 9519455 (-) True plekhg5b
XM_039799971.1 mRNA downstream 14845 9427600 ~ 9507250 (-) False plekhg5b
XM_039799970.1 mRNA downstream 44804 9427600 ~ 9477291 (-) False plekhg5b
XM_039799969.1 mRNA downstream 44804 9427600 ~ 9477291 (-) False plekhg5b
XM_039799972.1 mRNA downstream 45807 9427600 ~ 9476288 (-) False plekhg5b
XM_039799982.1 mRNA upstream 13238 9548670 ~ 9685634 (-) True klhl21
XM_039799981.1 mRNA upstream 13238 9548670 ~ 9569582 (-) False klhl21
XM_039799980.1 mRNA upstream 13238 9548670 ~ 9556423 (-) False klhl21
XM_039799985.1 mRNA upstream 154297 9689729 ~ 9724016 (-) False olfml3a
XM_039799987.1 mRNA upstream 154297 9689729 ~ 9722897 (-) False olfml3a
TU64005 other downstream 1334544 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1415900 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1635245 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 2023293 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 2035035 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 155098 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 172899 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 489562 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1107287 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2353509 11888941 ~ 11891046 (-) False srxn1

Expression Profile