RNA id: XM_039799981.1


Basic Information

Item Value
RNA id XM_039799981.1
length 3032
RNA type mRNA
GC content 0.54
exon number 5
gene id klhl21
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9548670 ~ 9685634 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGCAACATTCATTAGAGTTGAGGGTATCATGGCGCAGAAGAGGCCGAAGAGATCCGCAGCATCAAACTTTAATTTCAGCTCGATAATACGGCGTTAACTCGTTACACTCTTTAAAATTATTAACATCCGGCAAAGACAAATACTGACGAAAACATCATTCTGACCACAACCACCAGAAACTGAGACACCCAGAGGAGAGATGGAAAAGCCAGTCTTGCAGACACAGCCGTCCACCCTGCCTTTCTTCGACACGGCCCATGCCTTCAACCTGCTGCGGGGGATCCATGAACTCCGCGCCGAGCGCAAGTTTTTCGATGTGACTTTGTGCGCCGAGGGCCGCGAGTTCCACTGTCACCGCACAGTGTTGGCCGCTGCCAGCACATACTTCCGGGCGATGTTCGCAGGAACTTTGAGGGAGAGCGTTATGGACCGAGTAGTTCTACACGAGGTGTCAGCCGAGCTTTTGGGCCTGCTGGTGGACTTCTGCTACACCGGACGGGTCACCGTCACCCAGGAGAATGTGGACGTGCTACTGAAGACGGCCGATCTGTTTCAGTTCCCCTCCGTCAAAGAGGCCTGCTGTGCTTTCCTGGAGCAGCGGCTGGACGTTTCCAACTGCTTagagatccaggactttgccgaGGCCTACGCTTGCCGCGAGCTGGCGACCAGCGCTCGCCGCTTTGTCCTCAAAAACATAATGGAGCTGGCCAAAGCGAAGGACTTTGAGCGGTTGCCGTGGAAGCGCCTCTTTGAGTTTCTGTCAGATGACGAGCTTTGCGTGGACAAAGAGGAGGTAGTTTATCAGATCGCCGTGCGCTGGGTGAAGGCTGACCTCAAGCGAAGGCTGCACTACTGGCCCGAGCTCCTACAGCAGGTGCGACTCCCCTTTGTCCGGAGGTTCTTTCTGTTGGCCCACGTGGAGAGCGACCCGCTCGTCTACCTGTCGCCCACCTGCCTCCGCATGGTGAACGAGGCCCGGAGCTTCCAGTCCTGCGAGTACGACCGCCACGACAGGCCCTGCCACCGAATGCGGCCGCGGCCGTCCACGGGGCTGGCAGAGATCCTGGTGGTGGTAGGAGGCTGCGACCAGGACTGCGATGAGCTGGTCACAGTGGACTGTTACAACCCCCAGACCGGACAGTGGCGCTACCTGGCCGAGTTCCCCGACCACCTCGGAGGGGGCTACAGCATAGCTGCCCTCGGAAACGACATGTATGTCACAGGTGGCTCCGATGGCTCTCGCCTCTACGACGGCGTGTGGCGCTACAAGTCGAGCGTTAACGAGTGGACCGAGGCGGCGCCCATGCTGAAGGCCCGCGAGTACCACAGCTCTAGTGTGCTGAAAGGTCAGCTCTATGTGGTGGCATCGGACAGCACGGAGCGCTACGATCACGCTCTGGACTGCTGGGAGGCCTTACCGCCCATGCTGCACGCCATGGACAACTGCTCGGTCACCACGTGCAGCGGACGCCTGTACGCCATAGGCTCCCTGACCGGGGAGGACACCATGGCCATCCAGAGCTACGATGCAGACTCCAACCGCTGGGCCATGGTCAGCTGTGGACAGCTGCCGCCGTGGTCCTTCACACCCAAAACTGTGACCCTCAAAAGCCTCATCTACTTCATCAGGGATGACTCGGCCGAGGTGGATGTTTATAATCCTCAAAAGAACGAGTGGGACAAAATCAGTCCGATGACCCAGGTCCACGTTGGAGGCAGTGTGGCGGCCCTGGGCGGTAAATTATATGTGTCTGGTGGTTACGACAACACGTTTGAGCTGTCGGATGTGGTGGAGGCGTACGACCCGACCACCCGCTCCTGGACTCTTGCCGGACGACTGCCTCAGCCCACATTCTGGCACGGCAGCGTCAGCATATTCCGCCAGTTCATGCCGCAGGTGTCCAGCGCATTCGAACCCGCCGACATACCCGAGTCAAACGCCATCCACCTGCACCGGCACCAGCGCCCGCACGCGCTCCACAACCTCAACAACAATCCCATCCAAAACCAGAACCAGGATGTGAACCCAGCACACTGAGTTTGGGCCCAGAAACCCATGTTGACATTTTCAGTGTGTTCTCCCTCATTGTCAGCAGTCTGTTGGCTGGCTGAGTTCCAAAAAAGACCTGGTGTTTCTTAGCCCCGTTTCGTCTCACTGCGTGGGAGCCCGTCCCGGATGGATAGAAAAGTTTAGGGAAGCCACTGCCTTCAAGTCAAAAGTGGGGGAATTTAACCAAACCAAACCGTTAAGTGTTCATTCACACTAGATAGTCGGTCCGGCAATTCGCCGCGGGAATGTGCGGTTGTGGGATATAACTTAAaaggcccatttgtgtgacatcctgttgtgttctttaacacTCCCCACCCAATGTAGCACGAGTAGACTTTAAATTTCACAATGTTGGTTTTCCACCAGATTACTTATAGGTCTTGACATTGCCGACCGTACTTGAAGGCAGCTTATTtcagggagaaagaaaagagactgaGGAACTGTGCTTTGTGCTGGAGCTCGTtgcaggaaacagtcagctgttacacCAACTCCTGGGCACATaagtgcttgtgttttgtttttaaccttCATAGGGTTTTCCCTGGGTTTTTAAAGCACTATGGTGCAAATGACTGCATACActcatttgcatattggtgACGTCATCTTGCAATTATTTGCATAAAGCTTGGTGATTGTCGGTTGCAGCAAGTGATACATCACCAAACAAAAAGCTAAACTTGGAGGtgcctttttatatatataataacagtTCCCATTTTGAGACTTGTTGACTCAAAAAGCAGAAATAGTTGATGTGTGAAGAATCAAAAAAtagggcgagagagagaggacagacccTGGCTCTTTTCTCACCTCTACAAATCTGAACAGCCACGGCCTGAAGCGAGTGTGAATGTCAGATTGTCGGTTACAGAAATTCTGGGAAGCATACTGGCAGCCTCATCCTAAAGGTCTTTTCTCCTGTAATACCAAAAATATACTCAATATACAACACTTTCAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64642 lncRNA downstream 54798 9427206 ~ 9493872 (-) False plekhg5b
TU64646 lncRNA downstream 161755 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA downstream 163449 9379000 ~ 9385221 (-) False LOC120558858
TU64502 lncRNA downstream 263418 9284917 ~ 9285252 (-) True G48311
TU64497 lncRNA downstream 266148 9282296 ~ 9282522 (-) True G48306
TU64673 lncRNA upstream 158292 9727874 ~ 9729476 (-) False c1qtnf12
TU64672 lncRNA upstream 158643 9728225 ~ 9730079 (-) False c1qtnf12
TU64674 lncRNA upstream 158643 9728225 ~ 9729476 (-) False c1qtnf12
TU64671 lncRNA upstream 191308 9760890 ~ 9762449 (-) True G48436
XR_005639087.1 lncRNA upstream 194486 9764068 ~ 9766189 (-) True LOC120558310
XM_039799978.1 mRNA downstream 12987 9522095 ~ 9535683 (-) False nol9
XM_039799977.1 mRNA downstream 13238 9522095 ~ 9535432 (-) True nol9
XM_039799971.1 mRNA downstream 41420 9427600 ~ 9507250 (-) False plekhg5b
XM_039799985.1 mRNA upstream 120147 9689729 ~ 9724016 (-) False olfml3a
XM_039799987.1 mRNA upstream 120147 9689729 ~ 9722897 (-) False olfml3a
XM_039799986.1 mRNA upstream 120147 9689729 ~ 9721812 (-) False olfml3a
XM_039799984.1 mRNA upstream 120147 9689729 ~ 9698321 (-) True olfml3a
XM_039799988.1 mRNA upstream 120147 9689729 ~ 9695416 (-) False olfml3a
TU64005 other downstream 1361119 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1442475 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1661820 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 2049868 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 2061610 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 120948 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 138749 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 455412 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1073137 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2319359 11888941 ~ 11891046 (-) False srxn1

Expression Profile