RNA id: XM_039799999.1


Basic Information

Item Value
RNA id XM_039799999.1
length 1776
RNA type mRNA
GC content 0.58
exon number 6
gene id slc35a2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39207730 ~ 39246036 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGTCCTATGGTCCTATCTCTGCAGCAGTTTCTCCTCCACTTCCTGAACACCTCAGCCGCTCCACAGTGTGTTTTCATCCCGGTTGTCCCCGAGCTTTTTCCTAACCTTACCTCCGGTCTAATATCCGTCTCACAGCACGGCTGCCTCCCGCTTTAATCAAACTACAAACCGGAGTTTTGTGCTCCGGTTCGGTCTGAAGCCTGAGCCGTAGTTGGAGCTAGCTTAGCTTAACTGGGAGGTTAGCGGAGCGTTAGCCGCGAGCAGGCAGCGGGGCGAAGGCTCGGTCCGGGCGGGCGTGCAGAGGGAGCGCGAGCGCGCAGCATGGCCGTTGGGAACCACAGCCAGGCGGTGGAGGAAAAGGCAGCGAGCCGGAGTCAGAGTGAAGTGAACCGGAAGCTGAAGTACATCAGCCTGGCGGTGCTGGTGGTCCAGAATGCATCGCTCATCCTCAGCATCCGATACGTCCGCACGTTGCCGGGCGACCGCTTCTTCACGACGTCAGCCGTGGTCATGGCGGAGGTCCTGAAGGTCCTGACGTGTCTGCTCATCATCCTGCTGCAGAAGAGATtcaACGTGAAGCAGACGGTGCTGTTCCTGGTGGACTCCATAGTGTTCCAGTATAAAGACACTCTGAAACTGGCCGTtccttctctcatctacacgctGCAGAACAACCTGCAGTACATCGCCATCTCCAACCTGCCGGCCGCCACCTTCCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCTCTGTTCAGCGTGCTGATGCTGAGGAAGTCTCTGTCCAGAGTTCAGTGGGTTTCTCTGGTGCTGCTGTTCGCTGGAGTCGCCATCGTACAGgtggaGCAGGAGGGGAAGAAGGAGGCCTCGGTGTCGGGCGCCTCCAACCAGAACTACACCGTGGGTCTGGTCGCCGTGGTGATCAGCTGCCTGTCGTCGGGCTTCGCCGGCGTCTACTTCGAGAAGATCCTGAAGGGCAGCTCGGCGTCCGTCTGGGTGAGGAACGTGCAGCTGGGCATCTTCGGCACGGCGCTCGGCATGCTGGGACTGTGGTGGAACGACGGCGAGGCCATCGCCGAGCGCGGCTTCCTGTTCGGCTACACGGACGCGGTGTGGTGCGTGATCTTCAACCAGGCGTTCGGCGGGCTGCTGGTGGCCGTGGTGGTGAAGTACGCCGACAACATCCTGAAGGGCTTCGCCACGTCCTTCTCCATCATCGTCTCCACGGTGACGTCGGTGTACCTGTTCGGCTTCCACGTGGACCTGCTGTTCACCGCCGGCGCCGGGCTGGTCATCGGCGCCGTCTACATGTACAGCCTGCCCAAAGCCGctggcggcggcggcggcggtgCCGCGGCACTGAACGCCAACGCCGGCGTGGCGGCTTCCTCGGCGTCTTCGCGGACGGACGTCGGCACCGAGATGGAAGCCTTCCTGCCAAAGTGTGCAGGTAAACAGAAAGGATCCTGAGCGACagaccttcacacacacacacacacacacacacacacacagagacagacacacacagacacacacacacacacctgctatCAATTCATAAAATCCAGAAATGGACTTTTAATATCTGCCTTTTCACCACAATAGTATTAAATCCTGATTATTTCTTCCACAAAGTTGCTTTTACAATAACCGTTAAAATATCCAGCTATAGGAAACAAAACATATAGTATCCTATATCCAGCtctacctccacagcgctgcggagaaaggtctggctgcaccacagatgcattctgggataggagaa

Function

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901679 nucleotide transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005351 carbohydrate molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74993 lncRNA upstream 51558 39113763 ~ 39156172 (+) False si:ch211-180f4.1
TU75016 lncRNA upstream 86002 39118042 ~ 39121728 (+) True G56069
TU74996 lncRNA upstream 92178 39092662 ~ 39115552 (+) True G56065
TU74994 lncRNA upstream 93124 39113763 ~ 39114606 (+) False si:ch211-180f4.1
TU74986 lncRNA upstream 96934 39049867 ~ 39110796 (+) True G56059
TU75028 lncRNA downstream 3019 39249055 ~ 39252514 (+) False G56072
TU75049 lncRNA downstream 57434 39303470 ~ 39303845 (+) True G56082
TU75050 lncRNA downstream 69227 39315263 ~ 39316993 (+) True G56083
TU75051 lncRNA downstream 69227 39315263 ~ 39316259 (+) False G56083
TU75067 lncRNA downstream 120480 39366516 ~ 39497157 (+) False G56094
XM_039800000.1 mRNA upstream 7323 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 21697 39132420 ~ 39186033 (+) True otud5a
XM_039799996.1 mRNA upstream 92862 39097131 ~ 39114868 (+) True si:ch211-180f4.1
XM_039800488.1 mRNA upstream 124340 38972410 ~ 39083390 (+) True LOC120559065
XM_039800487.1 mRNA upstream 269887 38843562 ~ 38937843 (+) True LOC120559064
XM_039800155.1 mRNA downstream 35973 39282009 ~ 39313729 (+) True bcap31
XM_039799938.1 mRNA downstream 171296 39417332 ~ 40418704 (+) True kcnd1
XM_039799945.1 mRNA downstream 508503 39754539 ~ 39760147 (+) True LOC120558742
XM_039799942.1 mRNA downstream 562827 39808863 ~ 39811404 (+) True LOC120558738
XM_039799944.1 mRNA downstream 649929 39895965 ~ 39897486 (+) True LOC120558740
TU74991 other upstream 124234 39079180 ~ 39083496 (+) False LOC120559065
TU74966 other upstream 179213 39013658 ~ 39028517 (+) False LOC120559065
TU74909 other upstream 271717 38886368 ~ 38936013 (+) False LOC120559064
TU74946 other upstream 308447 38874827 ~ 38899283 (+) True G56033
TU75020 other downstream 3132 39249168 ~ 39270428 (+) True G56072
TU75121 other downstream 277110 39523146 ~ 39545307 (+) False G56112
TU75107 other downstream 285117 39531153 ~ 39564268 (+) False G56112
TU75120 other downstream 285117 39531153 ~ 39555987 (+) False G56112
TU75122 other downstream 285117 39531153 ~ 39545307 (+) False G56112

Expression Profile