RNA id: XM_039800015.1


Basic Information

Item Value
RNA id XM_039800015.1
length 1694
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC120558781
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10131691 ~ 10136381 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGTGCGCACTTCACCTGTCCTCCTCAAGAGGCAGAGCTACTGCGGTACATCAGCATCAGCAGATCCGCTGCAGACCCCGCACACCTCAGACGCAAACGCTCCCCAGACTTGTCTCATTACATTGCATAATAGCGACAAGCCATCATGcGTGAGTGTATCTCCATCCATGTCGGTCAGGCCGGAGTCCAGATTGGCAACGCCTGCTGGGAGCTTTACTGCCTGGAACATGGGATCCAGCCGGACGGGCAGATGCCCAGTGACAAAGCCATCGGAGGAGGAGACGATTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTgtttttgtggatctggagccCACTGTCATTGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACTGGCAAGGAGGATGCTGCCAACAACTACGCCCGCGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACCGGATCCGCAAACTGGCTGACCAGTGCACTGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTCGGGGGTGGCACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGCCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACGGCCGTGGTGGAGCCCTACAACGCCATCCTGACCACCCACACTACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGCAGGAACCTCGATATTGAGCGTCCCACTTACACCAACCTGAACAGGTTGATCAGTCAGATAGTGTCCTCCATCACTGCCTCCCTCCGTTTCGACGGTGCCCTTAATGTCGATCTGACAGAGTTCCAGACCAACTTGGTGCCGTATCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAGGCTTACCATGAGCAGCTCTCGGTGTCAGAAATCACCAACGCCTGCTTCgagccagccaatcagatggtGAAATGTGACCCTCGCCACGGCAAATACATGGCTTGCTGCCTGCTGTTCCGTGGCGACGTGGTGCCCAAAGATGTGAATGCGGCCATCGCCACCATTAAAACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATCAACTACCAGCCTCCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCATAAGTTTGATCTGATGTACGCGAAGCGTGCCTTTGTCCACTGGTATGTGGGTGaggggatggaggagggagagtTCTCCGAGGCCAGAGAGGACATGGCAGCTCTGGAGAAGGATTACGAGGAGGTTGGAGTCGACTCTATTGAgggtgagggagaggaggaaggagaggaataTTAAAAGGAACATAAAAGCACCAGTTAAACATAAGCACAGAACAGTTTGTCTATTCATTACCAGCTTTGTTATGTTCAGAGTTAAAGTCATTAAGTCTGGCTCTGTCCTAAATAAAATTCCTGTAATGTGAAgttgtttgtgttatttattgAAACTTTTTTGTGTGAATACTGACGAATAAACTATAAATTGCA

Function

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64777 lncRNA downstream 107698 10023128 ~ 10023993 (-) True G48522
XR_005639099.1 lncRNA downstream 113337 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA downstream 114552 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA downstream 115573 10014967 ~ 10016118 (-) False LOC120558372
TU64726 lncRNA downstream 212812 9916578 ~ 9918879 (-) True G48477
TU64856 lncRNA upstream 163163 10299544 ~ 10299879 (-) True G48569
TU64912 lncRNA upstream 167070 10303451 ~ 10316636 (-) True G48617
TU64914 lncRNA upstream 177574 10313955 ~ 10375462 (-) False G48617
TU64920 lncRNA upstream 267756 10404137 ~ 10404797 (-) True G48623
TU64942 lncRNA upstream 442695 10579076 ~ 10579364 (-) True G48638
XM_039800013.1 mRNA downstream 22591 10094913 ~ 10109100 (-) True LOC120558779
XM_039801810.1 mRNA downstream 146558 9978253 ~ 9985133 (-) False mul1b
XM_039801809.1 mRNA downstream 146558 9978253 ~ 9985133 (-) True mul1b
XM_039801489.1 mRNA downstream 198499 9925177 ~ 9933192 (-) True zgc:193690
XM_039800987.1 mRNA downstream 215556 9904308 ~ 9916135 (-) True ints11
XM_039799833.1 mRNA upstream 180438 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800731.1 mRNA upstream 406552 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA upstream 406552 10542933 ~ 10566475 (-) True ptpn22
XM_039801697.1 mRNA upstream 731477 10867858 ~ 10906926 (-) False si:dkey-261h17.1
XM_039801699.1 mRNA upstream 731477 10867858 ~ 10906926 (-) True si:dkey-261h17.1
TU64778 other downstream 105866 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 407557 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 433584 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 2025496 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 2244841 7815151 ~ 7886850 (-) True G47937
TU65038 other upstream 506338 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 1752560 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 1990505 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 1990505 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 2013413 12149794 ~ 12169209 (-) False dnmt3ba

Expression Profile