RNA id: XM_039800018.1


Basic Information

Item Value
RNA id XM_039800018.1
length 4833
RNA type mRNA
GC content 0.51
exon number 7
gene id zbtb46
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17835080 ~ 17895082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGatagtgagagagtgagtgtagGGGAGAGtgagatagagaaagacatagacagaggaggagggggaggctCCTGATACCAAGACACGGAAAAGCAggggagggaagagagaaagagaaaaggggcTGGTGGAGGAAGAAGAGCGGGGAGTGGGAGAAAACAGGGGGAATAACACCTAAAGAAAGCATACAGAAGAGAGCAAGGACAGTACCTAGTGCTTTGGACATcccctcctttcttctctcagGTTGTCACACCAGATTGGACTCCGAAGGACCGACACCGCGTCCACTCCAGACCCCATGGGGTAACAGCAGACGTTTGGAGGAGAGGCTTTTGTTCAGCTACACAGATGAACAACAGGAAGGAGGACATGGAGATCTCCTCTCACTACCGTCAGCTCCTCAGAGAGCTCAATGAGCAGAGGCAGCACGGCATCCTGTGCGACGCCTGTGTCATCGTGGATGGAAAGATCTTCAAGGCCCATAAGAACGTGCTCCTGGGCTCCTCACGCTACTTCAAGACTCTTTACTGCCAGGTTAAAAAAGGGGCAGAGCCTCACCACCAGACTACTGTCACTCACCTGGACATTGTCACCGCGACAGGCTTCAAAGCCATACTGGACTTCATGTACTCGGCGCACCTCGCTCTTACCAGTAAGAACGTGATCGAGGTCATGTCAGCCGCCAGCTACCTGCAGATGACTGACATTGTCCAGGCATGCCACAGCTTCATCAAGGCTGCGCTGGACATCAGCATCCGCTCTGAGATGGCTGACGAACTGGCCGACTTTGAGATGGGAGCTGTTGCTGCCGCTGGCATAGgcggaggtggaggaggtggaggactGGGTATAGCAGGTGCAGGGGGTGGTGCAGGAACAGGtttgggaggaggaggaggaggaggaggaggaagcatcGTGGGCATGGCTTCTGAAGCCCTGGCCTCCATCATGTCTGGTCGCAGCACCTCCCCTTGGCTGGCACGCCGCACCAGCCCGGCCAACTCTTCTGGGGACTCGGCCATCGCCAGCTGCCACGAGGGAGGCAGCATGTATGGCAAGGAGGACCAAGAACCCCCCAAGAGCCATGAGAGCCAGGAAGAAGCCTGCCACGACTCCCAGCCCGCCTGGCCACATGACTATAGGCCTGTCACCGTCAAAGAGGAACAGGTGTCCCCCGCCTCCTCCTCACATCCCCGGGACACTCCCAGAGGGGCAGCCCAGAGCCAGGGGGAGCAAGGGGCTGGAGGGGCtgctggaggaggtggagagggaCCCTGGCAACCCCTATCAGGGTCAGGGCGGAGGAAGAACAGGAAGAACAAAGACACTGTTAGGCATATTACCCAGCAGGCTGAGAGGAACTGGGACAGAGAgcgagacagggagagagaaagggacagTAGGCCTGGATCTCCTCTGCCTTCCATGCTGGCTGTGGCTGGATGGAACTACAGTGGACAGGAAATCCCAGGGGCAGACGTGACCGAACCCAACAGCTCAGACAGCCGCGGCGAACGCCTCGACTTCTTCCTCAAGCAGGAAGAGCCTCTCACCACAGAGCCCAGCTACATGGGTCCCAACGAATCAGAAGAGGCCGGGGGAGGAGGCGTGGGTGGAACAATCTCATCTGTAGCCAATCTGAAGGCGGCGCTGATGAGTAAGAACAGCCTGCTGTCTCTGCGGGCTGAGATGATGGGAGATGATAACCCTTTGCTGTTTGAGTACCTGCCCAAAGGAGCACACTCCCTGTCTTGGCTCCGCTCCAACAACTACTGCAGCACGCTCCGGCCAGGGGCCACGGGGGCCACTATTCATAACAAACAGGGGGCtggctcctctcctcttcctacTCTTccacttcttcctcttcttcctcctcatcttccaCCAACACCACCGACACTAccgccatcatcatcatcatcatcatcatcatcatcatcatcatcagcatacTTCCCACCCACTCCGCCCACACCACTGCACCCCTCTGAGCCTCGGCCCCTGGAGGCCCCCGGTCTGCGGGCCGGGGCACCCCCGCTGCGCTCAGAAGGGTTGGACATGGAAGTGGAAGAGGCCGGCGGGGGCCCAGAGCCCTCCACCTTGCCTGAGGAGGGTGTAAAAGAcaaagaagacatgaaagagtaCAGCACAGCCTTGGAAGGTGACCAGTCTCCTGTCGAGAGGGATCAGATGGGCGATGAGAGCTGTGCTGGTGGCTTGACTGTGCCTGCGTCAGTGTCAGTGGTTGGCAGAGGAACTAAAGGGCTGATGGTGCTGGACGAAGAGGTTGGGTCAGGGAAAAGAGTCCTGCCAGAGCCCGGTGCCTGGCCCTCACAGGGGTTTGCCTGCTCCCTGTGCAAACGGCTGTTCAGCAGCCTGGAGCACCTCAGGGAACACGAGTACCGCCACACCCTGTCTCTGATGGCCTTGTCTCTGGACTGGCCGAGCATGCACGGTCCGTACCACCAACCTACCCAGGCCCATCACCAGCCACAATCCCAGCCTGCCCACTTCCACCAGTCCCATTATCGCCCTGCAGTGGAAGAGCTTGTGCCGGCGCGCTACCTCTGCTCCCAGTGCCCCGCCAGCTTCACCCTCAAATCCAACGCCGACCGACACGAAAAGACCATCCACTTTAAGAAGAAGCTGATGCAGTGTGTGTACTGTCTGAAAAACTTCAGAGACCGCACAGACCTGCACAGGCACCTGTCCTCTGTGCACTCCAAAGAGAGAGGGCACACCTGCCCTGCCTGTGCCAAGGCTTTTAGCACCCAAAAAAACCTGTCTACACATGTTAAAGTGTGCTGCCAGGTGGGGTCAGTGCCAGGAGATATGCTGGGAAGAGGCACTGGGATGGAAATTTGTCAGGGTGGGGTTATAGATTCACTGTGGCGGCTTTCTCAAGAGATGAAAGTTGACAATCATGATCTCAGTATCAATTTGGAAAATTGATGCAGGCCGCATGCTTATGTACACATAATCATTCCTATCAGCTAGCAGTGTATTGTTAATGCCAAAATGCTCTGTGGCGTTATTGCACTGACAAGGGAAGGATTCCTTTTAAATCAAGTatctgttgacatttttaaaaataccTAGGGACTACTCTTTTTTTACAACTTGTtaaatattatgttattattttttttactatgaaTTGACAGCTTACATGTAAACAATGCACAGTTGCTATGCAAAGCCGATCGGTTTAAACAACAACTGACTGAAGTTATAAGTAGAACAGATTTTTAAGTAATCTTTAGGTTTGTGAATAGTTTGAGTGTGCACTGATTGGAACCAATAACAGGTGAATAACTTTTCTGTTGTGGTGCTGACTCGAGAGACGGGGGGGCGTCTTTCCGCCTCCCTGACCCAAACCACTTGTCTGGCTCTCTGTCGCCAGTCACCAGGCTGACTAAactcttctctcctttttaGGCAGAGAGATCTTTATCTTTGTGTCCATCCCTGCATTATGGGCACACAGACACTCAGGCTTTACTGGGGCTCACAGCCCACACAACCACACCACCTGCAGGAACTTTGTAGAATTGCAGCATGAGACTAGAATTAAGACCAAGATCAGATTGTTTCTGTTGCCAGTGGTAGCGTTCCTCAAAATAACATAAAACGTAAaggaatattattatttatctatttttttaaacactgtggTTACTTTTCTTTACACTGAAActcaaagcaaaacaaagtcaTTGTATCACCATCCCCACTGAACACGTAGCTTGTCATCTCATCGCTCTGACATGATTACCTTCAGTCAGTGCTGTCAGATCAGTGCAGATGGAGGGGATGTGTCAAACCAGACAAAGCCAGCTAAACAATAGACCAGTAGAAGCTCTGATGGGGGttgggtggtgtcattttctctctctctttccatctcctcTATCCCAGATCTGTAAGTCTTCTTTTGGCTGGAGCTGGATAGTAATTGGTCCGGCCCTTCTTAACCCCTGACCTCTTCATCTGAAGAGGAAGTGGGGACCGAGGGGCAGATGACCCTTAAACCAGATGAGTTTAGTGATGTCACTGCTGCAGACAGATAACAGTGTGAGACAAGTGGGGAAAATTCAGGAGAGGAATAAGGGAGATGGTGAGTGTGTTGCAGAGCTGCGAAGATATTGTAATCAGCATGAGCACTGACTTCAAAATCATTGCTAATATAAATTCACACCAATTTCTGCCAAACATTCAGGCCTGCAACTATAAACCAAGATATTTTCCTGATACAGCCCAGTTATGAAGGTGCATTGTGTGTACACCCATACTGTGAGTAGTACATACCCAAAGGGAAGACAGCCACCTGTGTTTCCCTCTAATATTCCACAGTCACTCCAACACATAGAACTGTAATTTCTATGTGTTCAGTAAAAGCAGAACTTGTGTCTATTGGGAACATGCCCCCTTACCTGTtgtgtgtacatacacacaGGGAACACCCAAATGCCAAATCCTTTCTCATACTAAATCCCGTCTCTCAGGTAACACTCTGTTCTAGCCAGCAGCTGAAACGGACTGGCAGGCTCCAAGAAGTTAGCAACTAATCAGGAACTCTGCAGAGCCAGCCATTCAGGAGAAACGACAAATACTGTACGGCTGTTGTGTGCGATTCTTGAGATGAGTGAATATGTGTTATTGTAAATGTTGaaagatatttaattttagAATATATAATTCCCTcctttacccccccccccctccatgcaCTGTACAAAGATATGTACTTTTCAAAACGGAATTATATTCTGCTTGTAGTTTTTGTGCTGTAATTAAACTATGATGGAAAATGTTTAATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67884 lncRNA downstream 50613 17782688 ~ 17786360 (-) True G50779
TU67797 lncRNA downstream 153454 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 366298 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 585699 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 631344 17203747 ~ 17205629 (-) True G50561
TU67914 lncRNA upstream 79674 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 79674 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 108593 18003674 ~ 18024302 (-) False samd10b
TU67928 lncRNA upstream 145328 18040409 ~ 18041404 (-) True G50803
TU67935 lncRNA upstream 158938 18054019 ~ 18057349 (-) True G50808
XM_039799340.1 mRNA downstream 100145 17689955 ~ 17736828 (-) False nkain4
XM_039799339.1 mRNA downstream 100147 17689955 ~ 17736826 (-) True nkain4
XM_039799336.1 mRNA downstream 154616 17671661 ~ 17682357 (-) False LOC120558364
XM_039799335.1 mRNA downstream 154616 17671661 ~ 17682357 (-) False LOC120558364
XM_039799334.1 mRNA downstream 154616 17671661 ~ 17682357 (-) True LOC120558364
XM_039800321.1 mRNA upstream 20175 17915256 ~ 17935671 (-) False uckl1b
XM_039800318.1 mRNA upstream 20175 17915256 ~ 17933102 (-) True uckl1b
XM_039800319.1 mRNA upstream 20175 17915256 ~ 17933101 (-) False uckl1b
XM_039800323.1 mRNA upstream 20175 17915256 ~ 17929170 (-) False uckl1b
XM_039800320.1 mRNA upstream 20175 17915256 ~ 17928991 (-) False uckl1b
TU67800 other downstream 147213 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1553117 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2983156 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2983156 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 3302368 14532124 ~ 14534605 (-) True G49766
TU68271 other upstream 985284 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1804692 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1806249 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1811598 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2425686 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile