RNA id: XM_039800028.1


Basic Information

Item Value
RNA id XM_039800028.1
length 1703
RNA type mRNA
GC content 0.49
exon number 11
gene id gpkow
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12504401 ~ 12511572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCACCTACTTCTTTTGGTTACAAACAATAATGGCGTCGCACGGGGAAGATACAGGTCTCCCCAAGTCTGTTGTTTCTGGGGACCAAATAGAGAAAAAACCCGCGGCAGTGTCGTTTGGTTTTACTAAAACAGTTAGCAAATTCAAACCTTCGACTGGAGACGCTGTGGTCAAGAGAGATGACAGAGATTACTTGACCGGAATTGACAGAAAAGAATTGCAAAGTTCAAAACCATCCGAGAAGCCCAAAGAGCTCATCATCCCTCTGATCCAGAAGAACCGCTGGCACAGACCCGACCGAGCAGGCCAGAGCGTGGAGTGTAATGTTAGTGGAGGCAAAACACAAGAAACGACCCAAGCCAATGACTCTGTGGAGTCACAGGCTGTCAAAGAACTCATTGAAGACTCCCGGAGGCAGCTTGAGCAGTGGCAGAATGGCCCTCAGTCAGAAAGCAACCCAAACCTTGCTATCCCCCTGTTGATGCAAAACAAAGTACCTGACGGCTTTGAGGATGGAGATCATGTAAAGGTGGATCTACGTCCTGAATCTTCGACAGAGGCAGATTACGATAGCGTTCCTGTTGAGGCTTATGGACTCGCTATGCTTAAAGGGATGGGCTGGAATAAAGAGGAAGGCATCGGACGCACCTTTAAGCAACATGTGAAGCCAATCGAACACGAGCTCCGTCCAAAAGGTTTGGGTCTTGGAGCTGATCGTTCAGCGATAAAGGACCTGGAGCCCACCAGACATAAGCGCCCCCCCAAGCCAGGCGACGAgcgagagaaggaggaggaactAGTGATGGGCCCAGGCGGCTGTGTCTTGGTGGAGTCGGGGGCACATAAAGACTTGTATGGCAAGATTGAAGGCGTTGATGCAGACAACGCTCGAGTTGTGGTGAAGCTGGCTATTGGCGGCAGGTCAGCGACAATCAGCCAGTATGCTATTAAACTGGTTGGGCGCCAGGAATACGACAAAAACAGCAAAGACCTCAGTCGCCTCGGTAAAGCCCACAAAgacaaggagaaggagaaagagcgAGAGAAGGAGCAACAGAGAcgggaggagaaagagaggcgTAGTAATGGCGACGAGGTAAAACCCAGGTCTTCGGAAAGAGATGGAGGAAAAgatgagaggaagaggaaacacAAAGAATCAAGTCAAGACAGtttCCTCTGTAGAGAGAGGCCTCCAGTGAAAGAGGCAAGGCGACCACCGCCCCCCCCCTCCTGGCTCCAGAGAGACTTGAAAGTTCGCTTCATAGACAAAGCTTTCAAAGGGGGCAGGTACTACAACTCAAAGATGCGTGTAGAGGATGTCCTGACACCgactatctgtgtgtgtcgaACTGAGGAGGGAAGACTGTTAGATGATGTGAAGCAGGGCATGCTGGAAACCATTATTCCAAAAAGTGACTGTGATTCCATAATGGTTGTACTGGGAGAGCACAGAGGACAGGTCGGTCGTATTCTCCAACGGGACAAGAACAAGTGCAGAGCCATGGTTCAGCTCGACCGACATGATGAGAAAGTGTTCACGCTGGATTATGACACCATTTGTCACTATGTAGGAGCAGCAGACCACTGATTCAAATACCCCCTGTCCTTTTCCATCCCATCTgaaatgttgttttgtgttattcaaaaataatggattttaaaagctttcaattttgtaataaaacattgtcAAGAATTGTA

Function

GO: NA

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 117177 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 123616 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 127425 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 128839 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 131093 12371821 ~ 12373308 (-) True G49178
TU65777 lncRNA upstream 93308 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 148476 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 148880 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 188857 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 257248 12768820 ~ 12771419 (-) True G49372
XM_039800034.1 mRNA downstream 4936 12494005 ~ 12499465 (-) True timm17b
XM_039802010.1 mRNA downstream 10634 12468700 ~ 12493767 (-) False LOC120559913
XM_039802009.1 mRNA downstream 10634 12468700 ~ 12493767 (-) True LOC120559913
XM_039802011.1 mRNA downstream 36398 12452487 ~ 12468003 (-) True sypb
XM_039802007.1 mRNA downstream 54733 12440017 ~ 12449668 (-) True plp2
XM_039800100.1 mRNA upstream 103369 12614941 ~ 12635550 (-) False LOC120558830
XM_039800098.1 mRNA upstream 103369 12614941 ~ 12635550 (-) True LOC120558830
XM_039799439.1 mRNA upstream 162815 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA upstream 162815 12674387 ~ 12678575 (-) False LOC120558433
XM_039799435.1 mRNA upstream 173714 12685286 ~ 12697057 (-) False LOC120558430
TU65695 other downstream 65676 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 112730 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 281399 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 335192 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 375976 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 740840 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1628808 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2020552 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2333766 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2333766 14845338 ~ 14853817 (-) False G49845

Expression Profile