RNA id: XM_039800038.1


Basic Information

Item Value
RNA id XM_039800038.1
length 4364
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC120558787
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15968560 ~ 16061896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGGTTCAGGATTTAACTAGAGGAAGGAGAAAAGGAGAAGCATGGCATTTTGCTgaagaaaaagtgagagaaaagactCTTGCATCATTAAAAAGTTTGTTCGTGCAGCAGAGGAGGAGACGGAGGAGGAGGCCATTGATGATCCCTGTTGAGTTTGTGCCTGTTCAAACAGGGATACGGGACGATTGGAGGATTCCTGCTCGTATCTGCGCTCCTACACATTCCAGTACCTGTGCATGCTGGAGCGGTGGAGAGCTTCTGCTGTAGCCATGATGTCTCAGAGGATCCCGGGCTGACGCACTGTGTTTAGGGACCATCACAGAGGACAGACCAACTGACCTGGATAGGAGCTATAAGAGAGCCGATGCAGCCAAAATAGAGCTTATTTGGAATAATGGATCCTGAGCATTAATACTGGGTCCGAATCAGTCCTTACAGAGGGTTCTTAAAAGGCCTGGCTTCCTGGGTTGGCGATGACTGAGACAGGTCCAGCGGTAATGTGGTTCTGGGCGGGTTAAAACCGCTCAAGCTgtcatccagtggcagtggcgaGGCTAGAGCTCCAGAGGAGGACAGATCCCACGTCCACGCCAGGGATTCACTGGCTGAAGAAATGAGCAGGGTCCTGCGCTTGTGGTGCCATGGTGCTTTTTAATGTTGTTGGATCCCACTACTCTTCTACCCTGTTGATTGTCTGAGCTCAGGATGTGGAAGTTCAAAGCGTTTTGCCTGGATTACTGGCATGTGCTGTGTTTGCACCCACACAACAACTTTTATAAGAgTGTGGAAGGGGATGGACGGCCCAGTGAGAGTGGCCCTTCCCTGGATGGTGGAGCCAGCTATGGCCAGGGCCCAGTGACTCACGGCTCAGCCATCAGCCCTGACCGATTTGACAGCCCGCTTTACAGCCACGGGGTCCAGCCTGGGCCTCAGAGACCCCGTCGGCCCAAGCTCCAGCACTCACAGTCCATCCTCCGTaagcaggctgaggaggaggccATCAAGCGGTCCCGCTCGCTCTCGGAGAGCTATGAGCTCTCTGCTGACCTCCAGGACAAACAGGTGGAGATGCTGGAACGTAAATATGGTGGACGATTCATAACTCGGCATGCGGCCCGCACCATCCAGACAGCCTTCCGCCAGTATCAGATGAACAAGAACTTTGAACGTCTCAGAAGCTCTATGTCTGAGAACCGTATGTCCAGACGCATTGTTCTCTCCAACATGAGGATGCAGCTCTCGTTTGAGGGCCCCGAGAAAGTGCACAGCTCCTACTTTGAAGGGAGGCAGGTGTCCATGACAGAGGATGGCACCCCGCTGTCCATGGTGCAGTCTGAGTGTGGAGATATAGAGGTCCACCAACAGGCCAACATGGCACCTCACCCAGCCCCACAGGGTGACCTGACAGATGCCATCACAGAGCTGGAGGACGCCTTTTCCAGGCAGGTGAAATCTCTGGCTGAGTCGATAGATGATGCACTGAACTGTCGCAGCCTTCAGGGGGATGAGGGTCCTGACCCAGAGACCATGGGCTGCTCCAAGGTGGAAAGGGAAGTGCCCTATCAAGTGAAGTCCCACCGCAGGGCAGCTGGACGAATGCACGATGAAACGTTGGCATCCTATAGCGATGTCACTCTGTTCATCGATGAGGAGGACATGTCCCCCGCTATTGCTCTGTCGAGGTCAGGGGACCAGCCCTCCAGCACAGAATCAGACTTGCGGTTGCGGTCGGTCAACTCCTCCCAGGACTACTGGCCTATTGACCCCAAAGATGAGGGTCGTGACACAGACACGAGCTGCCGCAGCACTCCTTCTCTAGAGTGCCAAGAGCAGCGACTTAGAATGGACCATCTTCCTTTGTTGACCATAGAACCTCCTAGTGACAGCTCTGCAGAGCTCAGTGACCGGTCTGACCGGGGCTCTGTCAAACGGCCGCCTGTGTATGAACCGCACGGCCACATTGTAACATCATCCCAGGCGAGCCCTAAACACATTTCCCACGGACCGCCACCGCGAGCTTCCTCCCGTGACGATGAGCCACCTCTGCGCCACCGCCACCGCCAGCTGGAAAGCCACTTAGCCATCAACGGCTCAGCCAACAGACAGAGCAAGTCAGAATCTGACTTCTCAGACGGGGACAACGACAGCATCAATAGCACATCCAACTCTAACGACACCATCAACTGCAGCTCCGAGTCCTCGTCGAGAGACAGCCTACGAGAGCAGACGCTCAGCAAGCAGACTTACCACAAAGAGACTCGCAACAGCTGGGACTCACCCATCTTCAGTAATGATGTTATTCGCAAGAGACACTACCGGATCGGCCTGAATCTCTTCAACAAGAAGCCGGAAAAGGGTATTCAGTACCTGACTGAGAGGGGATTCATCCCTGACACACCGGTTGGTGTGGCTCACTTCCTGCTGCAGAGGAAGGGGCTGAGCCGGCAGATGATTGGAGAATTTCTCGGCAATCGACAAAAACAGTTCAACAGAGATGTCTTGGACTGTGTGGTAGATGAAATGGACTTCCAGAGTATGGAGCTGGACGAGGCTCTCAGGAAATTTCAGAACCACATCCGTGTTCAGGGTGAAGCCCAGAAGGTAGAGCGGCTCATCGAAGCTTTCAGCCAGCGCTACTGCATCTGTAACCCTACAGTGGTGCGGCAGTTCAGGAACCCTGACACAATCTTCATCCTGGCGTTCGCCATCATCCTCCTCAACACTGACATGTACAGCCCCAATGTCAAGCCCGAGAGGAAGATGAAGATGGAGGACTTTATCAAGAATTTAAGAGGTGTAGATGATGGGGAAGATATCCCTAGGGAGACTCTGGTAGGCATCTATGAGAGGATCCGTAAGAGAGAGCTCAAGACCAACGAAGACCACGTATCGCAGGTGCAGAAGGTTGAGAAGCTCATTGTGGGAAAGAAACCTATTGGATCACTTCACCACGGCCTGGGATGTGTGCTGTCGCTGCCCCATCGCCGGCTGGTGTGTTACTGCCGTCTGTTTGAAGTGCCAGATCCCAACAAGCTCCAGAAGCTGGGCCTGCATCAGCGGGAGATCTTCCTGTTCAATGACCTGCTAGTGGTAACTAAGATTTTCCAGAAAAAGAAGAACTCGGTGACATACAGCTTCAGACAGTCCTTTTCTCTGTATGGGATGCAAGTCATTCTGTTTGAAAATCAGTATTACCCAAATGGAATCCGACTTACATCAGCGATTCCAGGTGCGGACATCAAAGTCCTCATCAACTTTAACGCGCCCAACCCCCAGGACCGCAAGAAGTTCACAGACGACCTACGAGAGTCCATTGCCGAGGTCCAGGAAATGGAGAAATACAGAATAGAGTCTGAGCTGGAGAAGCAGAAGGGGGTGGTGAGGCCCAGCATGTCGCAGAGCTCCGGTCTGAAGAAGGAAGCTGGCAACGGGAACATGAACCGCGCAAGTCTGGATGACACCTACACCATGGGTGAGGGCCTGAAGAGAAGCGCCCTCAGCAGCTCCCTGCGAGACCTCTCCGAAGCAGGCAAGCGGGGGCGTCGCAGCAGTGCAGGATCACTAGACAGCAATATGGAAGGGTCCATCATTAGCAGTCCACACACACGCCGGAGAGCCACCACGCCACGTGAGGGCGCACCCCGCGGCCAACCCTCCATCCCTAATTCAGCATCGACTTCCATCCTTGGGTCGCTCTTTGGCAGCAAGCGAGGCAAACCCTCATCCCAGAGCCACTCCCCTTTCCCTCAACCTGGTCAACCCACTCTCATTTCCCACAAGCCCCACCCGACCAACCTGCACCACACAGCACAGGTAGCACATACAGTGCAACTCCACGGCCACCATTCCCAGTACTGCCAAGTCCCACAGAACCCGCCGCcttaccaccaccaccaccactaccacccccctccccacacGCAGTACCACCAGCACCCAGGCTACGCCGCACATGCACACCAACACCTCCATTCACAGCACAGCCATTACAGCCAGCATTCCCAACACGCCTCGCATGCTCCCCACCACCACAGTCAGCAAGCGGGTTCGGCACCTGGCGGACCCAAACCTAAACACAGTGGCATCAGCACCGTAGTGTGATGCTCCTAACACCAAGAGGAGGAGCGAGGAGGGAACTTAATGAAAGAGGGACAATTGCTTACACCAAAGGGACTGACAGCATAACTCTATGGCCTGTCCACTGTGTTTTACTGCTGCTGTGATGGAAACCAATCACACGCGGTCACCTTTTTCACCTCCAGGTCCAACTAATATGCAGGATGGAAATCGGACTTAAATCTTCCAACAGGGGCCTTTTACTAGTTTGCCTGATCATGGGCATGGCCTCGTCAGGGTTTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66980 lncRNA downstream 11888 15952530 ~ 15956672 (-) True G50143
TU66991 lncRNA downstream 35262 15930121 ~ 15933298 (-) True G50153
TU66970 lncRNA downstream 72560 15879334 ~ 15896000 (-) True G50136
TU66972 lncRNA downstream 78443 15886890 ~ 15890117 (-) True G50138
TU66923 lncRNA downstream 280133 15685011 ~ 15688427 (-) True G50104
TU67119 lncRNA upstream 276450 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA upstream 363273 16373144 ~ 16379623 (-) True G50230
TU67178 lncRNA upstream 407050 16416921 ~ 16418613 (-) True G50278
TU67316 lncRNA upstream 570205 16580076 ~ 16580982 (-) True G50371
TU67324 lncRNA upstream 651127 16660998 ~ 16663045 (-) True G50378
XM_039799467.1 mRNA downstream 3655 15963557 ~ 15964905 (-) True gp9
XM_039801503.1 mRNA downstream 17530 15937829 ~ 15951030 (-) False raf1a
XM_039800936.1 mRNA upstream 56669 16066540 ~ 16095803 (-) True nup210
XM_039799246.1 mRNA upstream 144190 16154061 ~ 16162013 (-) True LOC120558319
XM_039801418.1 mRNA upstream 156434 16166305 ~ 16173032 (-) False ptpdc1b
XM_039801416.1 mRNA upstream 156434 16166305 ~ 16173032 (-) False ptpdc1b
XM_039801417.1 mRNA upstream 156434 16166305 ~ 16172859 (-) True ptpdc1b
TU66613 other downstream 1114743 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1114743 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1433955 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 1823338 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 2715088 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 271173 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 1678244 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1829673 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2870494 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3689902 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile