RNA id: XM_039800051.1


Basic Information

Item Value
RNA id XM_039800051.1
length 2484
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120558793
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6816707 ~ 6823536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGAGAGTAGAGGGGGGGTGTGATGTGTTTGGAGGAGGGACTCCATCATTTAGAGAAGTGAACAGTTCCTGGTTTACcagtgaagaagaaagagaggcagcATTAAACCATCAGATCCTCCAACATGAACGTCTGTCAGTCTCTGAtctgcttcttcttcctcaCACTGCAGGATGGAAACATTGGTCTCATCAATGCACAAATCATCGAGAGTACAGGAACTGAAGGAGGAGACATCACAGTTGGATGCTCCTTCACTCTCCCTGGAAGGAGGAGTATCTTCTTTCTGTATGTGAGCATCAGAAACCTGACTCCGTCTGACTCAGGACGGTACAGATGTGGTTTGATCAGATTTTTCCCATTCTCATCATCATACTTGGAGATTGAGATCCGAGTTACAGATGCTCCAACCTCTCCTCTCAGACCTTCTTCACCATCAGTCCCATCAGCCTCCacactgatgacatcacagagTTTAAGCTCCACACCTTCATCAGCCTCCacactgatgacatcacagagTTTAAGCTCCACACCTTCATCAGCCTCCCCTGAAGCCAGAGAGCAGCCtcgacagaaacacacagcacCAGCTGCACCTGCAGCTCCAGGTGCTCTGCTGTATGTGGGTCTGACTCTGGTCCTCTTGCTCATCACATTATCAGTAGCTTTGctgattttctgcaggaaaagaGCCAGGAAACCCAAAGAACCTCCTCTGGAAACTGAGTACTCTAATGTCACAAAGGCCAACCGAGTGTATGAGGAgatcagagaggacagacagagcaCATCTCCTCCTGTAGAAGTGTCTACAGTTTACACTTACGCCAAATACACCAAACCAGATGGAGTGGAAACCACAGAGGAGTACAGCTTAGTCACTGCACCCACTTCTCAGAAGAAAACTGAAGACGACCGGAGTGACCTCACCTACTCTGAGCTGGATCTTCCCAACGGTACAGCTGCCTCGCTGCACAGCGCCCCCTGTGGTGACGCAGATAACGTGGTCTACTCTGTTCCTCGGGTAGAAGCCAGCTCGGCCGGCAGCCACGCCCAAGACGCTTCCCCTCCTCTGTACTCTACTGTTActttacatcagctgtagctTCAACGCTGTCAGCGCCACATTTACTCTCTCAGGGGCCAACAGGGGACACAAAGTGCTTTGAACGAGTCACATTCACTCAAAGAAATCTGTTTTTATCATTATTGGGGGAAGCTATGTCAGTTACGGCTCAGTTTCTTTCTGAAGATGAAATGTTTTattagctctgttttttttattgcttttgctCAAATGTATGTATTCTTATACCAGttatatattaaattattatatactgtatttattctGTACTTTTCAAACTATAGTGGATGTGTTTAGGTGCAGTGATGAATCCAGTCATCATGAGAACAATGGCCTGTACAATTTCAAGTTCCTGATCTTCTGATACCAAATAGTCAATGGTAATTTACATATTCATGAACATTTTATCAATTGCACATTGTTAGTTTTCTGGCAGTAACCATTATTGTTGCATCAGCACGAATCATTAAAATAATCTTAGCATTTCAAAAGGTTGAAGTAAATCACATTATACAATAATTAAGATAATCTAATCTCTTGGCTCTAGCAGACAAGAAGCAGCTAGCCACCTGTAAGGTCACCCACCTGTCACTCAACGCAGCCACACCCTAATTATGCTGAACTTTGCAACTGGGATAGGCAGTATTTTTTGGCCGTTAATGGGCAAACATTCCATATATCCATTCCAATATTCCACTCATGTTTCatcatattgtaattcaagtgctctgacagaaaactagacttctgcacctcctctaTAAAATCTAGCCTGTGACCCTATGGAAACACGCGACCAGTGTTTCAAATCTGCAGAAGAGAGAACCACGTTTTTCTCTAGAAGGAAATCCGACAACATGGACTGCTTTCCCCTCCCGAGTCGACTCTGAACCGCTCCACAAACCCTGCCCTGGTGGAGTTGTTTCGTTAACCCCTGGCCAAGTGGTTAACCCGTTTATGTTCTACGTGGAAAATCCGCTGAACAAACTTAACGGACTGCACACAGTAAGGAGGCTTAAGTTTCTGGGCAGAGGAATAGTGGGTTTTGTTTAGATTAATACTTGTGCTATTGCTGCACGCTTGATTTATTAATCTGATCGGACCATCGAGTCCAATCTATTTTCTGTGAATGCACTCTGAACACGGTGCATTGTTGATATGTTGTGTGTTTGACTAATGTAGCCTGGTTTAAAACTGTAAATGCCACATTTCTTTTCTCCCGCTGGGAAGAAGTTAGCTACTGTACTGAATGAGAGTGTGATCATTGTCAGAACCTCGAAAATCAAGACTCAAGGTGCCTTTTCTTTATTCCAAGTGTGTTTtccctccatttctctctctttctctctctcgctctctctctctctctttctctctttctctctttctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63455 lncRNA downstream 244583 6571892 ~ 6572124 (-) True G47498
TU63441 lncRNA downstream 443164 6366360 ~ 6373543 (-) True G47485
TU63409 lncRNA downstream 579869 6232908 ~ 6236838 (-) True G47459
TU63397 lncRNA downstream 674818 6118484 ~ 6141889 (-) True G47447
TU63387 lncRNA downstream 780209 6036255 ~ 6036498 (-) True G47439
TU63642 lncRNA upstream 2719 6826253 ~ 6827520 (-) True G47641
TU63669 lncRNA upstream 131670 6955204 ~ 6962388 (-) False LOC120558602
TU63671 lncRNA upstream 138954 6962488 ~ 6967475 (-) False LOC120558602
TU63672 lncRNA upstream 138954 6962488 ~ 6967475 (-) False LOC120558602
TU63685 lncRNA upstream 226214 7049748 ~ 7270452 (-) False LOC120558809
XM_039801854.1 mRNA downstream 388784 6406363 ~ 6427923 (-) True tcea2
XM_039801403.1 mRNA downstream 1074754 5738321 ~ 5741953 (-) False LOC120559579
XM_039801402.1 mRNA downstream 1074754 5738321 ~ 5741953 (-) True LOC120559579
XM_039799517.1 mRNA downstream 1597994 5207222 ~ 5218713 (-) True LOC120558499
XM_039800604.1 mRNA downstream 2111167 4677700 ~ 4705540 (-) True efhd2
XM_039799655.1 mRNA upstream 4151 6827685 ~ 6838050 (-) True LOC120558600
XM_039799656.1 mRNA upstream 22501 6846035 ~ 6848369 (-) True LOC120558601
XM_039799657.1 mRNA upstream 131704 6955238 ~ 6964792 (-) False LOC120558602
XM_039799688.1 mRNA upstream 473032 7296566 ~ 7299426 (-) True LOC120558623
XM_039800065.1 mRNA upstream 496491 7320025 ~ 7359408 (-) True LOC120558800
TU63635 other downstream 11001 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 94978 6696445 ~ 6721729 (-) True G47624
TU63181 other downstream 2083422 4732796 ~ 4733285 (-) True G47254
TU63179 other downstream 2085566 4730501 ~ 4731141 (-) True G47252
TU62956 other downstream 2860325 3955604 ~ 3956382 (-) True G47059
TU63670 other upstream 131670 6955204 ~ 7036375 (-) True LOC120558602
TU63848 other upstream 661893 7485427 ~ 7487060 (-) False G47814
TU63850 other upstream 661893 7485427 ~ 7498802 (-) True G47814
TU64005 other upstream 948402 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 991617 7815151 ~ 7886850 (-) True G47937

Expression Profile