RNA id: XM_039800064.1



Basic Information


Item Value
RNA id XM_039800064.1
length 1100
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120558800
representative False

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7320025 ~ 7359408 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aagaaagagaagcagCGTTAAACCATCAGATCCTCCAACATGAACGTCTGTCAGTCTCTGAtctgcttcttcttcctcaCACTGCAGGATGGAAACATTGGTCTCATCAATGCAGAAATCATCGAGAGTAGAGGAACTGAAGGAGGAAACATCACAGTTAGATGCTCCTTCACTTTCTCTGGAAGGAGGAGTATCTTCTGTAAGGACGATTGTAAAGATGGAGACATTCTTATTGAGACAAAAGAGGACACAGCTCAGAGAGGCAGATAcagcattgaaaataaaaagatttcaaAATCTTCTGGTACAAATCTGTATTTGAGCATCACAAACCTGACTCAGTCTGACTCAGGACGGTACAGATGTGGTTTGGTCAGATCTTTCCTATTCTCACCATTATACCAGGAGATTGAGATCCGAATTACAGATGATCTCACCCtggttttgagtgtgtgtgtccctgtggtggtggtggtggtggtgctgctGTCTGCTGTTCTGCTGTTCTTCTACAAAAAGAGGACTAAGCACTCCTATGGTTCAAACCAGAGAGGAAACACAGACATCACCAGGACTGAGATTAACATCTATGAGAACTGCCCTCCACTCTCCACCCGTGCAGACTCCACCTACAAGAGTCTGGATCCAGCCTCCAGGGATCCGGACCCCATCTACTCTACTCTCTCTTAGATACAACAACTATGATGATGTCAGCAAGAGTTTCTGCTGAATGCACAGTAAAGCCTGGCTGCTGCTCATGGCAATGAAGGATTTTATTACCAACCAGAAGCATAAATAGGACTTGAGGAGGTTCAGGGCTTAGCCTggacccatttaaataaacctaatgcaatgcaaaacaacaattggcttgcccagcttgttaatacCAGTGCATGTTGATTTTAGCTGGCCGTTTGTAGAAGTTAGTTAAATGGCACCAATATTTGGCCTAATCATgactggcctggcaacccaaaggccaatgttttgtttccagatctgTGTGGTGactgatgatgtgggggggtctGAAAATTTTGAGcgttaaacacttcatttcattAATTTTTATTACCAACGATTTGACCACACTTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639188.1 lncRNA downstream 16464 7299825 ~ 7303561 (-) True LOC120558805
TU63681 lncRNA downstream 49573 7269928 ~ 7270452 (-) True LOC120558809
XR_005639197.1 lncRNA downstream 49628 7269928 ~ 7270397 (-) False LOC120558809
XR_005639196.1 lncRNA downstream 49628 7269928 ~ 7270397 (-) False LOC120558809
XR_005639199.1 lncRNA downstream 101633 7215463 ~ 7218392 (-) True LOC120558811
XR_005639198.1 lncRNA upstream 25233 7350697 ~ 7355910 (-) True LOC120558810
TU63757 lncRNA upstream 49280 7374744 ~ 7375214 (-) True G47745
XR_005639200.1 lncRNA upstream 52690 7378154 ~ 7391356 (-) True LOC120558813
TU63770 lncRNA upstream 98597 7424061 ~ 7427514 (-) True G47755
TU63771 lncRNA upstream 102070 7427534 ~ 7427925 (-) True G47756
XM_039799688.1 mRNA downstream 20599 7296566 ~ 7299426 (-) True LOC120558623
XM_039799657.1 mRNA downstream 355233 6955238 ~ 6964792 (-) False LOC120558602
XM_039799656.1 mRNA downstream 471656 6846035 ~ 6848369 (-) True LOC120558601
XM_039799655.1 mRNA downstream 481975 6827685 ~ 6838050 (-) True LOC120558600
XM_039800052.1 mRNA downstream 496495 6816707 ~ 6823530 (-) False LOC120558793
XM_039799689.1 mRNA upstream 50262 7375726 ~ 7407678 (-) True LOC120558624
XM_039800067.1 mRNA upstream 113719 7439183 ~ 7447849 (-) True LOC120558801
XM_039799769.1 mRNA upstream 265437 7590901 ~ 7599774 (-) True hsd17b10
XM_039799771.1 mRNA upstream 287023 7612487 ~ 7632545 (-) False fam120c
XM_039799770.1 mRNA upstream 287023 7612487 ~ 7632545 (-) True fam120c
TU63670 other downstream 283650 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 514319 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 598296 6696445 ~ 6721729 (-) True G47624
TU63181 other downstream 2586740 4732796 ~ 4733285 (-) True G47254
TU63179 other downstream 2588884 4730501 ~ 4731141 (-) True G47252
TU63848 other upstream 159963 7485427 ~ 7487060 (-) False G47814
TU63850 other upstream 159963 7485427 ~ 7498802 (-) True G47814
TU64005 other upstream 446472 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 489687 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 780597 8106061 ~ 8106195 (-) True LOC120559931

Expression Profile