RNA id: XM_039800067.1



Basic Information


Item Value
RNA id XM_039800067.1
length 842
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120558801
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7439183 ~ 7447849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTGGAATCTTGTTGCACCAAACCCATTGATGACCTTCTGCATTTAGCTGTGGgattaaaacacatGGATGTTAGCACAGAGTTCTCTGCAGGGAGCATCTGATCATCACCACTTCTTTGGATCTCTACAATCACTATCTgactgtttgattgtgtttttaatgtttcacagCTCCAACCTCTCCTCTCAGACCTTCTTCAACATCAGTCCCATCAGCCTCCacactgatgacatcacagagTTTAAGCTCCGCACCTTCATCAGCCTCCacactgatgacatcacagagTTTAAGCTCCACACCTTCATCAGCCTCCCcactgatgacatcacagagTTTAAGCACCACACCTTCATCAGCCTCCacactgatgacatcacagagTTTAAACTCCACACCTTCATCAGCCTCCCcactgatgacatcacagagTTTAAGCACAACACCTTCATCGGCCTccaccctgatgacatcacagacAACATCTTCTCCTATCTCCCCCTGGTTttggctgtgtgtgtccctgtggtggtggtgctggCAGCTGTTCTGCTGTTCTTCTACAAAAAGAGGACCAAGCACTCTGATGATTAACCTCTATGAGAACTGCCCTCCACTCTCCACCCGTGCAGACTCTACCTACCAGAGTCTGGATCCAGCCTCCAGGGATCCAGACCACATCTACTCTACTCTCTCTTAGATACAACACCTATGATGATGTCAGCAAGAGTTTCTGCTGAATGCACAGTGAAGCCTGGCTGCTGCTCATGGCAATGAAGACACAATTCTCAATTCAAGAAACAAGACCTGAGAATAAGTGTAACTGAAAATGTTAGTAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63773 lncRNA downstream 319 7438503 ~ 7438864 (-) True G47758
TU63772 lncRNA downstream 1365 7437500 ~ 7437818 (-) True G47757
TU63771 lncRNA downstream 11258 7427534 ~ 7427925 (-) True G47756
TU63770 lncRNA downstream 11669 7424061 ~ 7427514 (-) True G47755
XR_005639200.1 lncRNA downstream 47827 7378154 ~ 7391356 (-) True LOC120558813
TU63853 lncRNA upstream 52808 7500657 ~ 7500920 (-) True G47817
XR_005639162.1 lncRNA upstream 59447 7507296 ~ 7508404 (-) True LOC120558662
TU63857 lncRNA upstream 59472 7507321 ~ 7508425 (-) False LOC120558662
TU63883 lncRNA upstream 156118 7603967 ~ 7605303 (-) True G47846
TU63874 lncRNA upstream 160042 7607891 ~ 7623479 (-) True G47837
XM_039799689.1 mRNA downstream 31505 7375726 ~ 7407678 (-) True LOC120558624
XM_039800065.1 mRNA downstream 79775 7320025 ~ 7359408 (-) True LOC120558800
XM_039800064.1 mRNA downstream 113719 7320025 ~ 7325464 (-) False LOC120558800
XM_039799688.1 mRNA downstream 139757 7296566 ~ 7299426 (-) True LOC120558623
XM_039799657.1 mRNA downstream 474391 6955238 ~ 6964792 (-) False LOC120558602
XM_039799769.1 mRNA upstream 143052 7590901 ~ 7599774 (-) True hsd17b10
XM_039799771.1 mRNA upstream 164638 7612487 ~ 7632545 (-) False fam120c
XM_039799770.1 mRNA upstream 164638 7612487 ~ 7632545 (-) True fam120c
XM_039799778.1 mRNA upstream 226613 7674462 ~ 7707260 (-) True LOC120558669
XM_039800375.1 mRNA upstream 329938 7777787 ~ 7844399 (-) False spryd3
TU63670 other downstream 402808 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 633477 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 717454 6696445 ~ 6721729 (-) True G47624
TU63181 other downstream 2705898 4732796 ~ 4733285 (-) True G47254
TU63179 other downstream 2708042 4730501 ~ 4731141 (-) True G47252
TU63848 other upstream 37578 7485427 ~ 7487060 (-) False G47814
TU63850 other upstream 37578 7485427 ~ 7498802 (-) True G47814
TU64005 other upstream 324087 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 367302 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 658212 8106061 ~ 8106195 (-) True LOC120559931

Expression Profile