RNA id: XM_039800087.1


Basic Information

Item Value
RNA id XM_039800087.1
length 6672
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC120558823
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14707418 ~ 14750021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACAGTGGTGCTTGGAGCCGAGAGGGTcagggggaggagaggaaagggagTGGAGCGATAAGACGACAGGAGGAGATCCACCACAGGGTGACCAATTTAACCGGACCATCCTTggacagctaacgttaggctaTGGTCCTCCACCCTGGCCGCTCCCACCGAGAACCACACCGAATCGGATTGTCTGCTGCGGTCCTGTCGGGGAATAGAAAAAGAAGATGAACACGACCCAGCAGAAGCCGTGGAGATAGACCTGGCCGCAGAGACTGATCACCTCACTAACCTTGGTCTCTGATCACTGACCCTGGCCCAAACATCTAAAGCATTGTGAAGCGACTGTTGCGCCTTTGACCCCATCTAGTCACTCCCACCCTGTGGCCCTGCAGTGTGGCCTCTACAAACCCCTCCTCACTACTTCAAAATTTTGTCCACGGGGATAAATGAGTGAACAGGCTGCAAGGGAAAGGGCTGGGACATGTACCAGAACCCCAACAGAATGTCCTGGTTCAGTGGTTTCCTAGTCGCAAGAGTGGACGACCGCAAGACTGCGTGGGGGGAGCGCAATGGCAAGAAGTCCAAACGGAAAGGAAGCTCATCTCTCTGCAACCCGCGTTACATGAGCTGTCTGCGGGACTCAGATGCTATGGAGCCCCCCTCTGGAGCCCCCCTCCATCAGCACCACCGCGGAGGGTTGACTGGGGCCCTGGGAGGCGGGGGCAACTTCGGCGTCCGTTGCGGATGGCAGGAGGACCACTACGGCAAAAGAGTAGGGGCTCCCGGGGAAGGGGTGGGGCTGAAATCGGTCAACTTGGGCTTTGAGGATGGTGCGTTAAAAGGGAGGAAAGGGGGATGTAATGGAGGAAGCGGTGACATGGGCGATGACGGGTCCAATGGGGCAGCAGGGGTGGTGACGGCTGCAGACTGCTGGCTCAGGGTAGTACAGGTGTTCCAGTCAAAAAAATTCCAGTCCCGCAAACTGGAGCGCCTATACCAGCGTTACTTCTTCAGGCTGAACCAGAGCTCCTTGACCATGCTCATGGGGGTACTTGTGATCGTGTGCGGCATCATGCTGACCTTCCACTGTGTCCATGCCGCCCCTCACGTGGCTTATTCGTCAGCCCTGTCAGTCGCGATGGCGCTCTTCATGGCTCTTATGGTAGTGTGCAACCGCAACGGCTTCCACCAGGACTACATGTGGATGGTCAGTTACCTGGTGATTGGAGTCTTGCTGTCTGTACAGGTGTTCGGGGTGCTCATGGTGGCACCCAGGAGCGCTTCAGAAGGCATCTGGTGGTCCGTGTTTTTCATCTACATCATCTACACTCTGCTACCTGTGAGGATGAGAGCggcggtgctaagtggagcAGTGCTGTCCATCATACACGTGGTCACCACCTGGCAGATCAATCAGGAAGACCAGTTCCTATGGAAACAGGTGAGCGCTAATGTCCTGATCTTCCTGTGCACTAACATAATTGGTATCTGTACCCACTACCCCGCTGAGGTTTCCCAGAGACAAGCCTTCCAGGAGACCCGAGGATACATCCAGGCCAGACTACACCTGCAGAGGGAGAATCAACAACAGgaaCGTCTGTTGCTTTCAGTGTTGCCAAGGcacgttgctatggagatgaagGCTGACATCAATGCCAAGAAGGAAAACATGATGTTCCATAAAATCTATATccagaaacacgacaatgtcaGTATTCTGTTTGCAGACATCGAGGGTTTCACCAGCCTGGCCTCTCAATGCACGGCTCAGGAGCTGGTCATGACACTCAATGAACTCTTTGCCCGTTTTGACAAGCTGGCATCGGAGAACCACTGTCTACGTATTAAAATTTTGGGTGATTGTTACTATTGTGTGTCTGGACTGCCTGAACCCCGGGCTGACCACGCCCACTGCTGTGTGGAGATGGGCGTCGACATGATAGAGGCGATCTCgctgGTGCGCGAGGTGACAGGGGTCAACGTTAACATGCGCGTTGGGATTCACAGTGGGCGTGTGCACTGTGGTGTGCTTGGTCTCAGGAAGTGGCAGTTTGACGTGTGGTCAAACGATGTCACACTGGCAAACCACATGGAGGCGGGAGGCAAAGCAGGGCGGATCCACATCACTAAGGCCACCTTGCAGTATCTTAATGGAGACTATGAGGTGGAACCAGGTTTTGGAGGTGAGAGGAACGCGTATCTAAAGGACAACAGCATCGAGACCTTCCTGGTTCTTGGCTGCAGCCAGAAACGGAAGGAGGAGAAGGCGGTGATGGCTAAGATGCAGAGGACGAGAGCCAACTCTAATGAGGGGCTGATGCCACGCTGGGTCCCCGACAGAACCTTCTCCAGGACCAAAGACTCTAAAGTCTTTAGACAAATGggGATTGATGAGACCTCCAGTAAAGACAACCGTTGTGTTCAGGAGGCGATGAACCCGGAGGACGAGGTGGATGAATTTTTGGGGCGAGCTATTGACGCTCGCAGCATTGACCAGCTAAGAAAAGACCACGTTAAGAAGTTCCTGCTCACCTTCCAGACATCTAGCCTGGAGAAAAAGTATTCCAAGAAGGTGGACGATCGTTTTGGAGGCTATGTTGCGTGTACTCTACTAGTATTCTGCTTCATATCCTTCATACAGATTGTTATCTTTCCACACACCCCAGTCATGCTGGGAATCTACATTAGTATCTTTGTCATACTTGCCAACATCCTTTTCATCTGTGCCATATATTCGTGCATCAAGCTCTTTCCAGCTGCAATGCAGACTGTTTCAAAGAAGATTGTCCAGTCGCGCACCAACAGCACCCTGGTTGGAGTATTTACCATTATCCTTGTCTTCATCTCTGCCTTTGTTAATATGTTTGCCTGTGACACCAAGAGCTTGGCACAATGCGTAGCCGAGAAGCTGAACACCTCTGCAGCGCTGGTGACGCCCTGTTTGATCCGCACCTTGAATGTGTCCATTGAAGGGGGTCTGGAGATCTGTTCTAGCGAAGGCCCCTCCTGCCCTTTTCCTGAGTATTTCAGCTACAGTGTGCTGCTGACGCTGCTGGCTTGCTCAGTGTTCCTGCAGATCAGCAGCATAGGGAAGCTGGCCCTCATGCTGCTCATCCAGCTCACCTTCCTGCTGCTGGTGGAGTGGCCACAAGTAGCACTTTTCGACAACGCAGACCTCTTTGTCACCTCCAATGCCATgTCCAGTTTCAATGAAACTACAAACCAGTGCCCATTTGTTGTGACAAAAGTGTCCCTGAGGGTCATGACTCCAGTGATCCTCACAGTCTTTGTCCTGGCACTGTACCTGCACGCCCAGCAGGTTGAATCTACTGCACGCCTCGACTTCCTGTGGAAATTACAGGCcacagaggagaaggaggagatggaggaacTGCAAGCCTACAATCGTCGCCTCCTTCATAATATTCTGCCTAAGGACGTAGCCGCTCACTTTTTGGCGCGTGAGCGGCGTAACGACGAGCTGTACTACCAGTCCTGTGAGTGTGTGGCCGTCATGTTTGCCTCCATCAGCAATTTCTCTGAATTCTACGTGGAGCTGGAGGCCAACAACGAGGGAGTGGAGTGTCTCCGGCTGCTCAACGAGATCATTGCTGACTTTGATGAGATTATCAGTGAAGAGAAGTACAGGCAGCTAGAGAAGATCAAGACCATTGGTTCCACCTACATGGCGGCCTCCGGTCTCAATGACTCCACTTACGACAAGGAGGGCCGTTCACACATTATTGCACTGGCCGACTACGCCATGAGACTGAGGGAGCAGATGAAGTACATCAATGAGCATTCCTTCAACAACTTCCAGATGAAGATAGGTCTGAACATTGGACCAGTGGTAGCAGGGGTTATTGGTGCACGGAAGCCTCAATATGATATTTGGGGAAACACCGTCAATGTGGCCAGTCGTATGGACAGTACAGGTGTACCTGACTGCATACAGGTGACTACAGACCTTTACCAGGTGCTTGCAAACAAAGGGTACGTGTTGGAGTATCGTGGGGTGGTTAAGGTCAAAGGGAAAGGCGAAATGACAACCTACTTCCTGAACGATGGCCCGCCCAACAGTTAGCAACCGTGGCAGCAGCACATGTTGGGATGTTCCCCACTGCAAGGACACAGCACCACTGAGTGAGGACTCACAGTGTGAGAGAATGGCTTGAATCCCAagtaaggaggaaaaaaaactcaagaCTTCAAAAGGAAAGTGTTCTTGATGAAAGGAAATTTTCTCGTTTGACAGCCATTTTGGCTCACATACATGTTGAAGGACACATGTTTTTCTCATGTCTAGCCTCTCTCTCAGGCTTCTTGAAAGATGCAAAGtctgtttatttaaaacaacgcCTTTTAGCCTGTGTCAAAAGAAGATAAACGCTGTACATAAGGCTactttatatttttactttgttttttttctggtaaTTCTTTTTATTTCACATGAATTATGAACAGGTACtcatattttgtttttgacttaattatttattttgatctTGAAGTTTTGTGCAAAAGGTCCTTTATGAAAAAGTGTGAATACATACGTGCACAAATATCCAGTTTATTACACGTTAATAAGTGTGTATGTAcatgcatatttgtgtgtgtatgaatataTGTATGAACTGAGGAGGAATATATTGACCAAAGACTAAAGTATTTACTAAAAGCAAGGCAAGACATGTTTGATATGTTCTCACTACAACTGCTGGCAGCACAGGCTGcttattttgttttcataaaatatatacaatacatttattttgtctgCCATTCAGGCAGCAAAGATCCGATCACTTTAACTGAAAATTATGATGTTGCCCTCAACCTCTAAACAAAATGAGTAAAGACGACTAAGGATGTTATTAGAAGGTGATATCTGAAATCTATATTTTTAATCTCTGAGGACTAGAAGTAGCCCCAGCTGGGAATAGGATCCTCTTCATCCTTCATATCATGTCAGTTAGGTTCCTTAGAGCTTGAGCAGCCAGTGGGCAGCTGGTGTCAgcctttacagtatattgtCATCGACTGCTCCTTCCCTTTTAGAGAAGTATTTGTTGGTGCAAAAGGAAATGAAGGAACTTAGATCCAGAGGCATCAGGGGGGAAAACCTTGGATATCAACGCAGTGGTACCACACAGCCGGATTCTTCTATGAAGGAGAAATAGATGAAGGAAAGAAATATATATTGATTTTGACTGAATACTGTGCTTTGTAATCCTGAAGGGGCATAACTATTTTCACTGTGAGGTTTTTATGATACAACAAAAACTGCTTTCTTGCCAAACATAACTGCTTTGAAGCATGTCTGATTGTGGTATCttgttttcatttctgtttgttttaacGTAGGGTATTTTGTATCACTTCTGTATCCATCATTTGTATATtcttaatgttattattattattattattattatgatgatgattctgattaattattatgCTTATTATGATGATTCCATTCCAATGAAAAGGATCAAAGACCAGCACGCTTTCTTGTAAAATGCCAGTTGTAAAGCTCAAGCTCACTGGTACCAACTGATCAACTGCAGCCAATGAATTCTGCTGTTCAATCCTAATGTACAATACAGTATTTCAACTGGCGATAGGTGTGATCATGTATAGTAAGTAATAACCATTAGCTGCCTTTGCAGCAGAACCTGAGTGGTGTATGCTCACATAAGCATagcagtaaacacacacacacacatacagatgattcactgtgcttttattttatttatgccACTACTGCAGTATTGTAAATCTCAGTCAGGCTTTAAGGTGACCTCTCCCTCCCACACATTCACTTCTCAGcagtaaaaaaatgacatccCTGGTGTCACACTATGTGAAGAGGACAGAATGAATAAACTTAAACATATTTCTTGTATTATTCCTCCACTCAGTAGAAGTACTAATAGCTGAGTTTGATTGCCTTAAGTTAATAGAAAACAAATCATAGAATAACACTTAACAGGAACAGTGCCTGGGCAGAGAGAAAGGGATGAGGGCTTGTCGAGAATAATTTCCAGTAAACATTCTTATCAATGCAATTAacttggtttttccagcttcaACTTTTGTAATTGAGAGAATCAGTCCAGATTTAGCTCTTCCGCCACACTCAACAATGGCAACCAACAGTTGATCATGTTTGTACCAAAGCCAGCTCACGCAGCCTTGTGCTATTGGTCCCCTCCTGTGCAATGATATTTGGCCTTGGGGTGTGTTGGGAGCACCAGAGGACAGTAATGTAATGGAGATCACCAACTATCAAGTGAACTGTGACCAATGAAGAGTGATTCATATAAGCAAAGAGTTTATAGAATGGACATGAGTTTATAAAATGTGCATTGTATGTATTCTATTTCTATTGGCTGTCCATAGACTTGTGTTGATTGTTAACTCTTGGGATGTTTTGGGGGGAACAAGAGAGGGGAGGAAGGTTGTCCCCATACTACTGAAACAGTGTTTTGCTCAGGCCTGATGAATCCTTccgcatttgtttttgttttatttgtattttcccTGAGTTGGAGGAGTTGAAAGGGGAGTCTTTTTGCAGAGTTAAAGGACAAGAAGAGTTGAGGACTAtgacaaagagaaaaataacatttccccttgaagaaaaaaataaataaaaaaaaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66562 lncRNA downstream 23433 14682710 ~ 14683985 (-) True G49807
TU66555 lncRNA downstream 33570 14673628 ~ 14673848 (-) True G49802
TU66554 lncRNA downstream 35417 14669453 ~ 14672001 (-) True G49801
TU66514 lncRNA downstream 162786 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 281803 14416391 ~ 14425615 (-) True LOC120558545
TU66616 lncRNA upstream 95317 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 112774 14862795 ~ 14865747 (-) True G49862
TU66654 lncRNA upstream 134125 14884146 ~ 14885386 (-) True G49876
TU66656 lncRNA upstream 138754 14888775 ~ 14889514 (-) True G49878
TU66660 lncRNA upstream 152068 14902089 ~ 14902859 (-) True G49882
XM_039800783.1 mRNA downstream 9401 14685045 ~ 14698017 (-) False LOC120559225
XM_039800785.1 mRNA downstream 9520 14685045 ~ 14697898 (-) False LOC120559225
XM_039800786.1 mRNA downstream 9542 14685045 ~ 14697876 (-) False LOC120559225
XM_039800784.1 mRNA downstream 9543 14685045 ~ 14697875 (-) True LOC120559225
XM_039800751.1 mRNA downstream 87279 14616611 ~ 14620139 (-) True spryd4
XM_039800515.1 mRNA upstream 55084 14805105 ~ 14814207 (-) True ddx23
XM_039801574.1 mRNA upstream 73685 14823706 ~ 14833931 (-) True LOC120559665
XM_039801430.1 mRNA upstream 155030 14905051 ~ 14920772 (-) True LOC120559597
XM_039801140.1 mRNA upstream 176267 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA upstream 176267 14926288 ~ 14991890 (-) False LOC120559456
TU66513 other downstream 172813 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 562196 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1453946 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2268693 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2315747 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 95317 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 95317 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1531023 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2938094 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3089523 17839544 ~ 17886333 (-) False zbtb46

Expression Profile