RNA id: XM_039800090.1


Basic Information

Item Value
RNA id XM_039800090.1
length 6205
RNA type mRNA
GC content 0.50
exon number 16
gene id plxna2
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10909818 ~ 11129310 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTACTGTGGGCTTTGAATCCCGTTAGTTTCTTGGCTCACTCCTTACAGAATCAGTCTCTGTCTACCAGCTCAGATTCCAAATGTAGACGTAGATATAAAGTGACCAGCGGCTTGCGTGTCTTGACAGCGCCCTAATGACCAATGATGTGTGCTTTGATTTCAGATTCGGGGTTGGGAAGGTGCCAAGGCTTAAAGTGGCTGCGTTGCACCACTGTGAACCTGGACCATCTTGACACAGCTCTCTGCTACTACGAGACAGGGCTTTAATGAAGGTCTGTGACAAGAGGTGCATATGTAAGTTATGAGCACATCAATAAGCGAACGCTGTATCTTTGCATCAAATGAAGGTGCTTGAGGGAGCAAAGAAACCGAGCTGAGCACGATACACAGGCACACAAGTATGGATATTTTCCCGTTGGCTTGCCTGTCGCATCATATTTGTGCATGTTGATTTGAAAAGAAAATCGAAATTTAAGGAACTTCAAGACATAAATACGATATAAATGTTGCATATGATAGTTCAGAGACTAATTAAAGCTACAGTCCTTGCAATTctcttgtatttttttctaaacAAGGTGACCAATTAAAGCTGCATAGTTgtcctgttttgaacaatgtactagtctttttctctttcacgGTACCAGCCTGTGTCAGTCGATATGTGTCCTAAAGTGAAACATGACTGATAgaattgtactgtatgtaataaCCAAGCTTCACCTCACAGAAATGGCTTCATTTATCATTTCTCTCTTCACAAAACAGGCAGAACGTCTTCCAGGCAGTTCTGCGTTCTTTCAATATGAATTGAGTTATGTTCCAATCAAACAAATCACAGCTTGTTCCAAACAGGGCTGCTCCAAACAGGGCCATGAGtaatggattaaaaaaaaacattctgtatTTGATTACCCGTGCCGCCCAAGGTTGACTAAGATCCATTTGAGAGGTAGTGCGGTGGATTTCCAATATGGACACCCTCCAGCTATTGACCCTGTCTTTAAGTGGGCGCTGTGCTTTTAGTGTACTTACACTGGTTGTTCCACATCTTCTTCCTTCTGGCAGTTTTGCAATACTTTTGATGGCAGACACTGGCTCCCTTTCCCCCACTCTGCATTATTGATGCATCAGAGAATGTGGATAGCCTACTTTTTGTCATAACGCACTAAGGGCACAGATGCAGTCTCAGTTATgcaaagaaaagtaaaagtcaaCACTTGGcagtcaatattgagatcactgATCAAAGATTTATCATGtatgaataaaaatgaaagGAGTGATAGGCGAGTACACTTGTTGGGTGCCTTCCCATTGAAATCAATAGAACTGAATGGTGTCTGCAGCACAAGTAACATGATAGTTCAAAGTAAGAGACACAAAAGCTGGTGTAGGGCACTATGTTACTGATGCCGTGGCAAATTATAGGAAAAAACTTTTAAGGGTTGATTATTATCTCCAAAGTTGGAACACTCAGTTGACTCTGGTGAGTGGTGTAATAACTACATCTCTGAGCCAGAGAGAATGAGGGAGAGCAAATCAAAAGGTTTATCTAAAACTAGGGGGggaaaagagaagcagaaacggAGAAATGAAGAAATCAGGAGACGGGGAGACGAGAGCGAGAGAGGTGTGAGCAGGTTGACAGTTTGGCCTATAGATGGCAGTGTCCTAACAGAAACAGAGTTGGATGGGAGAGTGTCACTGAGTGGGTTCAGCGTGTGCTGCGCAGACAAAACTGTGATGGGTaagaacatttttcttttcataaatgTGATGCACTATCCAAATGTCAATTATCAATAGGATATTTAATATAGTCGGTTATAATGATTTCCAAAGGTAATAATAGGGCCATTTAAATTTTAGGcctatatcattattttttacagtaagTTATCCGAACTGTAAATTATACTTAGCATCTTAGAAACTTGAGAGATCCCTTTGGTAGTCTCCTTTTTTGTTATCAGTTGAGCGGATGGTGCATTGCAATTTACCATATGGATTAATGTTTACAGCAAAGTATTATTTGTTAGACAATATGGCTTACTCATGTAGTTCTCAATGCTCTAAGACTGCATTGCTGAATTCGACACAAATGTTCCTTTAATGTATTCATTATGAATGTTTGTTCTCTGGGCGGAAACGGTTAACACCATAACGAGCAGGAGTGTGAGGGGGGCTGGCTTTAAACACGCAGCGTGCCAGTGGCAGGgcagcgtacacacacacactactgttaCAGTACATTGATGGAGCCGCTAATGTGTGTCAGTCCGGTAGAGCCCCTGTGAGGAAGCGACGCTGCGCTGCGGCTCTGAaccgaccgaccgaccgacGCTGCGAAATTCCCCCCGCGGGACCATGGCAAGCCTGGCCGCGGCGTGCGTTCTGTAGAGCAGCCTGGACTGGAAACTGGAGGACGCCGAATCCCGAACTGAAGGAATGTGCCATTTTCATTGACACGGTCCTAGCAAAGTAACATTAGGAGGTCAGCTCACACGCTGAACGCTCTGCTGCGAAGTTTACGCACTGCATTTGCCATTTACTCGCCGTTATGAAGGTTTTTACTTGAATGAATGACGCCACCACCGCCGCAGCTTAACAGGTTCCGTAGGCTGATGTTGGCTATTTAAAGGCTTCGGACCAACTAGTGAATGTACAGTTATTGAAGCATCTACGTAAAGAGAGGGTTTGTCCAGATAGAGCATTTggaaacaattttttttctttcttcttttttcattttctttttttttccgcTGTGGATGTGAGCCTGTAGCGCGTCAGTTGAAGCCCAGAAGACAGCAGCCGCGCTGGACGCTGGGAGGGAGCAGGATAACCGGGACATCCAGTTTAAATGGAGAGAAACATGTGAAGACCCTTGTGAAGATTTGACCTGCAAGTTAGCCTTCGACAACAAAAAGGCCAGGGTCTCCTGCCGTCTTCCTCTCATTCattctctctgcctcctctgcAGTTTCCTTGCAGGCCCGTTAAACATGGAGGGCCGGCGGGCTGTGCGCAGGACTTCATCACCTGACCCTAAAGTAGGAGCTATATCTGCTCTGCTAGTCTTTTGGCTCTTAGTAATCCCTGCCTTGTGCAGCGGGCAGACATTCACTAGTTTCCACCCTGAACGTCGGGACTGGGTCTTCAACCACCTGACGGTTCACCAAACCACAGGGGCTTTGTACATTGGAGCAGTCAACCGTGTGTACAAGCTCTCGGGCAACCTGACCCTCCTCGTTTCCCATGATACAGGCCCAGAAGATGACAACAAGGCCTGCTACCCCCCTCTGATTGTCCAACCCTGTACTGAGCCCCTTGTCTCTACCAACAATGTCAACAAGCTTCTCCTCATTGATTATTCCCAAAATCGGTTGCTGGCCTGTGGCAGCCTGTACCAGGGTGTCTGCAAACTCCTCAGATTGGATGACCTTTTTATCTTGGTGGAGCCCTCCCACAAGAAAGAGCACTACCTCTCCAGCGTCAACCAGACTGGGACCATGTATGGGGTCATTGTGCCTTCACAGGGCCAGGATGGCACCCTGTTTATCGGCACGGCAGTGGATGGAAAACAGGACTACTTTCCCACCATCTCCAGTCGAAAGCTGCCCCGTGACCCAGAATCTTCTGCCATGCTTGACTACGAATTGCACACTGACTTTGTGTCCTCCCTCATCAAGATCCCATCAGACACGCTGGCACTGGTCTCCCACTTTGACATCTACTATGTTTACGGCTTCGCCAGCGGCAGCTTTGTTTACTTCCTGACTGTGCAGCCCGAGACGCCGGAGAACAGCATGTCGTCGAGCGGATCCACCAGTGACCTCTTCTACACCTCTCGCATCGTCCGCCTCTGCAAAGACGATCGCAAGTTTCACTCCTATGTCTCGCTGCCCGTCGGCTGTGTGAAGAACGGCGTCGAGTACCGGCTGCTGCAGGCCGCCTACCTCGGCAAGCCGGGCCGCTTTCTCGCTGCCTCGCTCAACATCAGCGCCCAAGATGACGTGCTCTTCACCATCTTCTCCAAGGGCCAGAAGCAGTTCCATCGCCCGCCGGATGACTCGGCGCTCTGCGTCTTCACCATCCGAGACATCAATGCACGAATCAAGGAGCGCCTGCAGTCCTGCTACCAGGGAGAGGGAAATCTTGAGCTCAACTGGCTGCTGGGGAAGGATGTGCAGTGCACCAAAGCGCCGGTGCCCATTGACGACTCTTTTTGTGGTCTGGACATCAACCAGCCGCTTGGTGGTTCTCAGCTGGTGACCGGTCACACTCTCTACACCGAGACACGCGACCGCATGACTTCGGTCACCTCCTATGTCTACAATGGCTACTGTGTAGCCTTTGTGGGCACCAAGAGTGGACGCCTAAAGAAGATCCGCGTCGACGGGCCTCCTCACGGCGGTGTCCAGTACGAGACGATATCGGTCATCAAGGACGGCAGCCCCGTCCTGCGAGATATGGCCTTCTCTCTCGACCGCAACTACCTCTACGTCATGTCTGAGAGACAGGTTACCCAAGTTCCGATCGAGTCCTGCGAGCAGTACGGGACCTGTGGAGAGTGTTTGAGCTCCGGGGACCCACACTGCGGTTGGTGTGTCCTGCATAATATCTGCTCTCAGAGGAACCGGTGTGAGCGTGCAGATGAGCCGTACCGCTTCGCTGCCTCTCTCAACCAGTGTGTGAAGGCCAGTGTGTACCCAGACAGCATTGCGGTGTCAGAGCCCAGCGTACCTCTGCTGGTGAAGGTGAGCCACGTTCCAGACCTTTCTGCGGGCATCACCTGCTCCTTCGGCAACCTGACGGAGGTGGAGGGGCAGGTCAATGGCAACCAGATACTCTGTGTGTCTCCTGCTGCCAAGGACGTCCCCCTCATCCCCACCGACCAAGATTGGTCAGGCGTCGAGCTGAGGCTTAACTCTAAGGAGACTGGTCAGATGCTTATCAGCACAGAGGTCAAATTCTACAACTGCAGCGTCCACCAACTGTGTCTGTCATGTGTGAACAGTGCCTTCCGCTGCCACTGGTGCAAGTACCGCAACTTGTGTACCCATGACCCCTCCAGCTGTTCCTTCCAGGAGGGACGAGTCAACGCCTCAGAGGACTGTCCGCAGCTGGTGCGCTCTGAGGAGATACTGATCCCAGCGGGGGAGGTGAAGCCTATCACCCTGAAGGCCAGGAACCTGCCCCAGCCCCAGTCTGGCCAGCGAGGCTACGAGTGCGTCCTCCACATCCAGGGTGTCAGCCACAGAGTCACCGCCCTCCGCTTCAACAGCTCCAGCGTGCAGTGCCAGAACAGCTCGTATCTGTACGAGGGAATGAAAATCAGTGAGCTGCCTGTGGATTTCTCGGTGGTGTGGAACGGCAACTTCATTATCGATAACCCGGAGAATATCCAAGTGCACCTGTACAAGTGTGCAGCCCAGCGGGACAGCTGTGGCACATGTCTGAAGGCAGAGAGGAAGTTCCAGTGCGGCTGGTGCAGTGGAGAGGGAAGGTGTACCCTGCTGCACCACTGCCCTCCCATCAATCCTTACACCACCCGCTGGCTAAACCTGTCTAGTAAAAATGTCAAGTGCACCAACCCACGCATCACTGAGGTGACTCCAGTGGCCGGACCTCCGGAGGGAGGCACACGGGTGACCATCCATGGCATGAACCTTGGTCTGGCCTTCTCGGACATGGTTGAAAACGTGGAGGTGGCAGGGGTGAGGTGTACCCCTGTAGAGGAAGGCTACATCATCGCTGAACAGATTGTATGTGAGATGGATGCAGCTCCTGCCGACAGTAGACCAGGTCCGGTCCAGCTGTGCGTTGCAGAGTGCAGACCAGAGCTCAGGGCTCGCTCCTCGCAACTCTACTCCTTTGTGACTCCCACAGTCACAGGTCTGTCCCCGAGCAGAGGTCCAGAGTCTGGGGGCACCAAAGTAACCATAATGGGAGAAAACCTTGGCGCCGGCAGCAGTGTCAACGTTCAGTTTGGAAACCAGACATGCGAGTACTTTGGaacAAATGACATACATCATACAGGCCGTGGTGAACGAAGCAGAGGAGAAACCGCATGTAAAACACCTACAACGTTTGATGAAAATATTAGTTATATAGCATGCTGGgagaaaatgaagaagaaaaaaaagtattcccAAGATAATGTGTATTACTCCCATTAAAGAAGCCGCTATATT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639118.1 lncRNA downstream 102964 10834886 ~ 10865045 (-) False LOC120558410
TU65055 lncRNA downstream 107322 10834888 ~ 10860687 (-) False LOC120558410
TU65057 lncRNA downstream 110000 10838207 ~ 10858009 (-) False LOC120558410
TU65059 lncRNA downstream 110000 10838207 ~ 10858009 (-) False LOC120558410
XR_005639117.1 lncRNA downstream 110019 10834886 ~ 10857990 (-) True LOC120558410
TU65104 lncRNA upstream 19764 11149074 ~ 11149382 (-) True G48749
TU65111 lncRNA upstream 79084 11208394 ~ 11208617 (-) True G48756
TU65116 lncRNA upstream 91687 11220997 ~ 11221479 (-) True G48761
TU65282 lncRNA upstream 308962 11438272 ~ 11438701 (-) True G48891
TU65275 lncRNA upstream 374517 11503827 ~ 11508308 (-) True LOC120558961
XM_039801697.1 mRNA downstream 61083 10867858 ~ 10906926 (-) False si:dkey-261h17.1
XM_039801699.1 mRNA downstream 61083 10867858 ~ 10906926 (-) True si:dkey-261h17.1
XM_039801698.1 mRNA downstream 72227 10867858 ~ 10895782 (-) False si:dkey-261h17.1
XM_039801696.1 mRNA downstream 76949 10867858 ~ 10891060 (-) False si:dkey-261h17.1
XM_039800731.1 mRNA downstream 401534 10542933 ~ 10566475 (-) False ptpn22
XM_039799550.1 mRNA upstream 208297 11337607 ~ 11348247 (-) True LOC120558517
XM_039799552.1 mRNA upstream 218976 11348286 ~ 11360195 (-) False slc48a1a
XM_039799551.1 mRNA upstream 218976 11348286 ~ 11351198 (-) True slc48a1a
XM_039799536.1 mRNA upstream 252872 11382182 ~ 11421461 (-) True itga5
XM_039800856.1 mRNA upstream 326433 11455743 ~ 11464126 (-) True csrnp2
TU65038 other downstream 313191 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 942184 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1243875 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1269902 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 2861814 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 759631 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 997576 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 997576 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 1020484 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 1091427 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile