RNA id: XM_039800109.1


Basic Information

Item Value
RNA id XM_039800109.1
length 1359
RNA type mRNA
GC content 0.55
exon number 14
gene id rbms2b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21048844 ~ 21066026 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCAATCACTACCGCTGTTCCTGGCTCAATTTCCCTAGCTGACGTCAGCTGACTGCCTGGCTCTCCGCTCCTCCGGACACAGTGCCGTGTAAAAATGCTGCTCTCTGTGCCGTCAAGGACAGGATTCAACCCGTACAACGGCTACACCGGCAAAAACATCAAGAAGCAGACGTATGTGTCCCCCTACAACCATCAGATGGCTCCTCCaagccccaacaacaacaatagcAGCAACACCACCTCCATCAGCAATGGCAGCAGTTGCAATGGGGGAGAGCAGCTGAGCAAAACCAACCTCTACATCCGTGGCCTCCATCCAGGAACCACAGACCAGGATCTGGTCAAACTCTGTCAGCCGTATGGGAAAATAGTGTCCACCAAGGCCATCCTGGACAAGACCACCAACAAGTGCAAAGGCTATGGCTTTGTTGACTTTGACAGTCCGTCCTCAGCTCAGAAGGCGGTGACAGCGCTGAAGGCTGGTGGAGTGCAGGCTCAGATGGCCAAGCAACAGGAGCAGGACCCCACCAACTTATACATCTCCAATCTGCCAATGTCCATGGACGAGCAGGAGCTGGAGAGCATGCTGAAGCCCTTCAGCCAGGCCATTTCCACACGCATCCTGCGTGATGCTAACGGAACCAGCCGAGGAGTGGGCTTTGCCAGGATGGAGTCAACAGAGAAATGTGAAGCCATCATCCAACATTTCAATGGAAAATATATCAAGACTCCACCTGGAGTTCCAGTGCCGCCAGAACCCCTGCTATGTAAATTTGCTGACGGAGGCCAGAAGAAGCGTCAGAGCCAAGGAAAATATCTGCAGAACGGCCGGCCCTGGACGAGAGATGGGGAGACGGGAGGAATGACGCTTACCTACGACCCCACCACAGCCTTACAGAATGGGTTCTATTCCTCTCCCTACAGCATTGCCCCCAACCGTATGATGGGGCCAACCTCCCTCTCCCCATACATGCATTCACCTGTGTCCACCTACCAGGTACACAACCCATCCTGGCTACATCATCAGTCGTACATCATGCCGCCCACAGGAGCAGTCCTGACGCCAGGAATGGACCACACCATGTCCATCCAGCCGACCTCCATGATGGGGCCCCTGACACAGCAGCTCAGCCACCTCTCCATGGGCGGCAGCGGCACATATATGCCTGCAAACACATCTATTCAGGGGACCTACATCCCCCAGTACACCCAAGTGCCTTCCACCAACATCTCAGTTGAGGAAAGTGCCGTCCAACCACCTGTTGCCATAGAGACACCCACAGAACACACAACCTACACCTACCAGCATAACAAGTGACGAGATCTTCCTCTGGAGCCGGAGTGACTCTCAAAGGGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68958 lncRNA downstream 58 21046049 ~ 21048786 (-) True G51606
TU68973 lncRNA downstream 6900 21037082 ~ 21041944 (-) True G51620
TU68967 lncRNA downstream 17145 21025133 ~ 21031699 (-) True G51614
TU68928 lncRNA downstream 96062 20862226 ~ 20952782 (-) True G51589
TU68930 lncRNA downstream 96062 20882974 ~ 20952782 (-) False G51589
TU69031 lncRNA upstream 100696 21166722 ~ 21167748 (-) True G51673
TU69042 lncRNA upstream 133314 21199340 ~ 21199849 (-) False esyt1a
XR_005639239.1 lncRNA upstream 153941 21219967 ~ 21222632 (-) True LOC120559347
TU69044 lncRNA upstream 155743 21221769 ~ 21222576 (-) False LOC120559347
TU69100 lncRNA upstream 225120 21291146 ~ 21293845 (-) True G51721
XM_039799485.1 mRNA downstream 42576 20963746 ~ 21006268 (-) True rarga
XM_039799486.1 mRNA downstream 65414 20963746 ~ 20983430 (-) False rarga
XM_039799487.1 mRNA downstream 66445 20963746 ~ 20982399 (-) False rarga
XM_039799365.1 mRNA downstream 138427 20906056 ~ 20910417 (-) True hoxc13a
XM_039799367.1 mRNA downstream 149709 20895268 ~ 20899135 (-) True hoxc12a
XM_039801492.1 mRNA upstream 73877 21139903 ~ 21141062 (-) True LOC120559628
XM_039801498.1 mRNA upstream 101878 21167904 ~ 21199043 (-) False fmnl3
XM_039801500.1 mRNA upstream 101909 21167935 ~ 21199043 (-) False fmnl3
XM_039801496.1 mRNA upstream 101909 21167935 ~ 21199043 (-) False fmnl3
XM_039801499.1 mRNA upstream 101921 21167947 ~ 21199043 (-) False fmnl3
XR_005639108.1 other downstream 96326 20883938 ~ 20952518 (-) False LOC120558386
XR_005639338.1 other upstream 101945 21167971 ~ 21199043 (-) True fmnl3
XR_005639356.1 other upstream 907675 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 1157123 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1463580 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 2148072 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile