RNA id: XM_039800110.1


Basic Information

Item Value
RNA id XM_039800110.1
length 1540
RNA type mRNA
GC content 0.50
exon number 13
gene id rbms2b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21048844 ~ 21066026 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGATTTCTTGTCTGTCAGTGGTTCAGTCCACATGGAGAAGAGAGTCTTAACATTCCTAGTAACTGATTAATCACACGTCCTAACAATTTTTGCTCTCTTTAGAGTGCTTGATAACCCCTTGAAAACAGACTCTTTTTTTAACCGTCTGTaggatttttctgtttttttttatgaaactgGACTGGGTCAGGAGAAGAAGAGCAAGGAGACGTCTCACCTTTTAGCCACAGGACGCCAAGGATTTCCATTACTTTTCTTATTTGGTTCTTCCTACCTTTCACAAATTTTCTTGCAGCTGcagaaatataatataaagagatTTTGTCTGTTAAACTATGATCTTTTCCATGGTGCCTTTTAAAGTTTCTTTAGCCAAGCAGCAGACGTATGTGTCCCCCTACAACCATCAGATGGCTCCTCCaagccccaacaacaacaatagcAGCAACACCACCTCCATCAGCAATGGCAGCAGTTGCAATGGGGGAGAGCAGCTGAGCAAAACCAACCTCTACATCCGTGGCCTCCATCCAGGAACCACAGACCAGGATCTGGTCAAACTCTGTCAGCCGTATGGGAAAATAGTGTCCACCAAGGCCATCCTGGACAAGACCACCAACAAGTGCAAAGGCTATGGCTTTGTTGACTTTGACAGTCCGTCCTCAGCTCAGAAGGCGGTGACAGCGCTGAAGGCTGGTGGAGTGCAGGCTCAGATGGCCAAGCAACAGGAGCAGGACCCCACCAACTTATACATCTCCAATCTGCCAATGTCCATGGACGAGCAGGAGCTGGAGAGCATGCTGAAGCCCTTCAGCCAGGCCATTTCCACACGCATCCTGCGTGATGCTAACGGAACCAGCCGAGGAGTGGGCTTTGCCAGGATGGAGTCAACAGAGAAATGTGAAGCCATCATCCAACATTTCAATGGAAAATATATCAAGACTCCACCTGGAGTTCCAGTGCCGCCAGAACCCCTGCTATGTAAATTTGCTGACGGAGGCCAGAAGAAGCGTCAGAGCCAAGGAAAATATCTGCAGAACGGCCGGCCCTGGACGAGAGATGGGGAGACGGGAGGAATGACGCTTACCTACGACCCCACCACAGCCTTACAGAATGGGTTCTATTCCTCTCCCTACAGCATTGCCCCCAACCGTATGATGGGGCCAACCTCCCTCTCCCCATACATGCATTCACCTGTGTCCACCTACCAGGTACACAACCCATCCTGGCTACATCATCAGTCGTACATCATGCCGCCCACAGGAGCAGTCCTGACGCCAGGAATGGACCACACCATGTCCATCCAGCCGACCTCCATGATGGGGCCCCTGACACAGCAGCTCAGCCACCTCTCCATGGGCGGCAGCGGCACATATATGCCTGCAAACACATCTATTCAGGGGACCTACATCCCCCAGTACACCCAAGTGCCTTCCACCAACATCTCAGTTGAGGAAAGTGCCGTCCAACCACCTGTTGCCATAGAGACACCCACAGAACACACAACCTACACCTACCAGCATAACAAGTGACGAGGT

Function

GO: NA

KEGG:

id description
K24990 RBMS; RNA-binding motif, single-stranded-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68958 lncRNA downstream 251 21046049 ~ 21048786 (-) True G51606
TU68973 lncRNA downstream 7093 21037082 ~ 21041944 (-) True G51620
TU68967 lncRNA downstream 17338 21025133 ~ 21031699 (-) True G51614
TU68930 lncRNA downstream 96255 20882974 ~ 20952782 (-) False G51589
TU69031 lncRNA upstream 102240 21166722 ~ 21167748 (-) True G51673
TU69042 lncRNA upstream 134858 21199340 ~ 21199849 (-) False esyt1a
XR_005639239.1 lncRNA upstream 155485 21219967 ~ 21222632 (-) True LOC120559347
TU69044 lncRNA upstream 157287 21221769 ~ 21222576 (-) False LOC120559347
TU69100 lncRNA upstream 226664 21291146 ~ 21293845 (-) True G51721
XM_039799485.1 mRNA downstream 42769 20963746 ~ 21006268 (-) True rarga
XM_039799486.1 mRNA downstream 65607 20963746 ~ 20983430 (-) False rarga
XM_039799487.1 mRNA downstream 66638 20963746 ~ 20982399 (-) False rarga
XM_039799365.1 mRNA downstream 138620 20906056 ~ 20910417 (-) True hoxc13a
XM_039799367.1 mRNA downstream 149902 20895268 ~ 20899135 (-) True hoxc12a
XM_039801492.1 mRNA upstream 75421 21139903 ~ 21141062 (-) True LOC120559628
XM_039801498.1 mRNA upstream 103422 21167904 ~ 21199043 (-) False fmnl3
XM_039801500.1 mRNA upstream 103453 21167935 ~ 21199043 (-) False fmnl3
XM_039801496.1 mRNA upstream 103453 21167935 ~ 21199043 (-) False fmnl3
XM_039801499.1 mRNA upstream 103465 21167947 ~ 21199043 (-) False fmnl3
XR_005639108.1 other downstream 96519 20883938 ~ 20952518 (-) False LOC120558386
XR_005639338.1 other upstream 103489 21167971 ~ 21199043 (-) True fmnl3
XR_005639356.1 other upstream 909219 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 1158667 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1465124 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 2149616 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile