RNA id: XM_039800164.1


Basic Information

Item Value
RNA id XM_039800164.1
length 1195
RNA type mRNA
GC content 0.46
exon number 6
gene id ssr4
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22065075 ~ 22076836 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACAGTCCACGTCACTGCAGCGCAGCCGCAGAGGTGTAGCAGCAGTAAGCTGAGGTGGATTTCCtttcagttagctagctagtgtgAAAGGACCAGTGCAGTTTTTGCAGCTAGACCACAGAAACAACCTCTCGGATAACAAAATGATTCGGATAGCTGCTTTCCTCGCTGTGCTGGTGGTCGCCTGCTCGGGAGAGACCTGCACAGACCCAGCAATCACCCCGTCGGCCTACACCACCTCTGACGCCGTCATCTCCTCTGAGTCTGTCTTCATCGTTGAGCTCAGCCTGGCCTGTGCCAACGGAGCACAGAGTGTGACTCTGTATGCTGATGTCAATGGAAGACAGTTCCCTGTGACTAGAGGCCAGGATGTTGGCAAGTACCAGGTGTCCTGGAGTCTCCCTCACAAACAGGCCAGCTCTGGAACATATCAGGTCAAATTCTTCGATGAGGAGTCCTACAGTGCCCTGCGTAAGGCCCAGAGAAACAATGAAGATGTAAATGCCATTCagcctcttttctctgtcaacATTGACCACAGGGGTGCTTGGAATGGCCCATGGGTGTCTACTGAGGTGGTGGCTGCCCTCATGGGTATCCTGGTCTACTACATGGCCTTCAGTGCTAAGGGCACCATCCAAGCATAAAGGATTCACAATCACTGGATCTTTAAAGACTGTATTCTGGTGGATCTTGACCAACAATCCATCATCCAGTGTTGTGGCGAGCCAAGAGGATTTTGCCACTTGATCTACTTTGGGACAAGGAGCAAGAGCAGCAgtctttgtatttgtttttattcagaccTTGTCTGTATGCCATCAGTCTTATACATTTTTCAGATGAATTTCGTCAAAAGTTTGTTTTGTCAATATGGatgtaattttgtaattttttgatAAAACCAAACAATAAACCTGGACCAcataaattaacaaaacaaatatagGTCATGTATTCAGTCCTGCTTAAAAGATGTTGCTACATCCAGACTAGATTATTCTTTGTCCTCCTGTATGAATGCACTGGCCAGATTGGGACTTGTACAAATGTGCGGAACATCAACAGAGAGCGGTCAAGACCTCAGTGCGTATAATATGTCAACAATTTGACGTGCACTGGCTGGCCTGAACAGGTCTAGTGTATGTCTCTTCCAGTAAATTTAATAAATGGCTTGTTTTTCTTCCAGTGTAA

Function

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69459 lncRNA downstream 4151 22060712 ~ 22060924 (-) True G52013
TU69456 lncRNA downstream 9976 22053714 ~ 22055099 (-) True G52010
TU69455 lncRNA downstream 17346 22046768 ~ 22047729 (-) True G52009
TU69412 lncRNA downstream 107364 21957461 ~ 21957711 (-) True G51978
XR_005639357.1 lncRNA downstream 167484 21896328 ~ 21897591 (-) True LOC120559723
XR_005639343.1 lncRNA upstream 3063 22079899 ~ 22080456 (-) True LOC120559667
TU69595 lncRNA upstream 165687 22242523 ~ 22243328 (-) True G52126
TU69593 lncRNA upstream 166975 22243811 ~ 22266053 (-) True G52124
TU69596 lncRNA upstream 170274 22247110 ~ 22248083 (-) True G52127
TU69597 lncRNA upstream 171301 22248137 ~ 22248720 (-) True G52128
XM_039800927.1 mRNA downstream 42429 22016334 ~ 22022646 (-) False fam3a
XM_039800926.1 mRNA downstream 42429 22016334 ~ 22022646 (-) True fam3a
XM_039801653.1 mRNA downstream 50034 21970052 ~ 22015041 (-) False si:dkey-151g10.3
XM_039799723.1 mRNA upstream 4683 22081519 ~ 22090163 (-) False LOC120558639
XM_039799724.1 mRNA upstream 4683 22081519 ~ 22088049 (-) True LOC120558639
XM_039799722.1 mRNA upstream 15670 22092506 ~ 22103785 (-) True LOC120558638
XM_039799726.1 mRNA upstream 28787 22105623 ~ 22109059 (-) False naa10
XM_039799725.1 mRNA upstream 28787 22105623 ~ 22109059 (-) True naa10
XR_005639356.1 other downstream 50032 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639338.1 other downstream 866032 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 1112557 20920699 ~ 20952518 (-) False LOC120558386
XR_005639375.1 other upstream 146313 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 452770 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1137262 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1137262 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU70089 other upstream 1231664 23308500 ~ 23319684 (-) True G52501

Expression Profile